PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre08.g385350.t1.1
Common NameCHLREDRAFT_148404
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family AP2
Protein Properties Length: 851aa    MW: 88618.8 Da    PI: 8.1703
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre08.g385350.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.2e-135199255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         y+GV+w++k++rW + I        + k+++lg+f+t+eeAa++ ++ + + +g
  Cre08.g385350.t1.1 51 AYRGVCWHRKSKRWQSAINS------SgKHVYLGSFDTEEEAARMFDKVAIRVRG 99
                        69*************99888......44********************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.07E-1350108No hitNo description
SuperFamilySSF541711.37E-1450108IPR016177DNA-binding domain
SMARTSM003804.1E-1451113IPR001471AP2/ERF domain
PROSITE profilePS5103215.47551107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1551108IPR001471AP2/ERF domain
PfamPF008478.0E-85199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MPPACGLVQG DASWRLNTSK EMQFDDGAGA MDDAVRAAGD ALGARRPPTS AYRGVCWHRK  60
SKRWQSAINS SGKHVYLGSF DTEEEAARMF DKVAIRVRGG KAKLNFPVED YVGPDGQLLP  120
SDPADPRLEA VVREARRALM DKQQQRAGEA LDMGGAGAGM PGHYGYYAPL SGLAAAPLAL  180
PAPLPLPSPP LLGGHPHSHG DADGGLFAKR RRYDLPYGSE HGGPVLELSK PPATAGLRPA  240
QYPPQYPPHY QQQYPPAYQQ QQQYQQPHAG MAVVDGSGSR SAVYLRQPPP VPLDVSSFTA  300
TPSTVGAPRA VPASVSLRTS SPRLHMEPPQ SQQQPQQLMQ LVVRQGGGSL TGVLGGGSGP  360
APGGGMDDDV VAAVGGGAMQ LKPDDRTATG TGMAQQQQQQ TQQPPSSSSG APANTEALLL  420
AALLQREQQR EQQRREQREQ QQQQQQLQQE DEAEQSAASV LRHLLRCSQQ QTTKAAGESA  480
EAANVRRSSC GDMGSGVAAS SGCGAKRSRE EGEDGAARWS PRHESSLLPP ASGSAVSLRA  540
QSSGPAPTGG TVPSAPASAT PASAAPAAGD DVPALVRRFL AAAPSQLPRG ATLQCVVPVS  600
EEPAAAVLLG YTYCTSGSGS ATASPTTSAA RGDGAVAAGG ADVADVTAPA RGSHPSSPTA  660
AGGLAPSGSA FARASTSARE QWGAGVFLRG ACRDLGSTFS TGEDALQAAQ GCVRLMLDCL  720
VPLAPPPSAA AAREEHRPQA PPLPRSQPVK RSWPQSAHSH SEEVPAPQRP QQPACPAPLP  780
SRAGSGSILE TLQRQVQQQQ QSMRQPPSPK EVLKPEQKQQ QPLKLEDLLS GASSSQLLAL  840
LTRLCQQQQQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.25970.0normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre08.g385350.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001694204.10.0predicted protein
TrEMBLA8IYY80.0A8IYY8_CHLRE; Predicted protein
STRINGEDP026370.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3683512
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.12e-15AP2 family protein
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]