PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cre08.g378800.t1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 211aa MW: 22164.8 Da PI: 8.9906 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 34.7 | 2.5e-11 | 9 | 42 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkg 34 C +Cgt Tp+WR+gp d++ LCnaCG +y kg Cre08.g378800.t1.2 9 CCHCGTVATPCWRKGPcDKPV-LCNACGSRYLVKG 42 99**************77777.*******996665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 10.95 | 3 | 35 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 0.0015 | 3 | 62 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-10 | 5 | 44 | No hit | No description |
CDD | cd00202 | 2.88E-10 | 8 | 42 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.7E-9 | 9 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.8E-9 | 9 | 42 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MRGSTGGPCC HCGTVATPCW RKGPCDKPVL CNACGSRYLV KGSLAGYFPG ARRASAGTRS 60 EAPQIQATVV SAAGKSAARK SAALSSVAAS AGAKRKVQEL DGNETGAKRI FNNYEALEEL 120 RAFFASSRGP QAPAQTSDSQ DSQGQFRDEA QYLDASSDDG LEHPDSEPVA ALRHMRAPLN 180 ATTAANYSAP HVPTFQRRPR KQLHPVPCSC * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Cre.258 | 1e-136 | normal conditions| nutrient deficiency |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cre08.g378800.t1.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_001694360.1 | 1e-118 | predicted protein, partial | ||||
TrEMBL | A0A2K3DHW3 | 1e-152 | A0A2K3DHW3_CHLRE; Uncharacterized protein | ||||
STRING | EDP02793 | 1e-118 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 | Representative plant | OGRP2749 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47140.1 | 9e-17 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cre08.g378800.t1.2 |