PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre08.g364400.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family ERF
Protein Properties Length: 1379aa    MW: 133833 Da    PI: 5.6674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre08.g364400.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-20706754355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa+a++aa+++++g
  Cre08.g364400.t1.1 706 YRGVRQRP-WGKWAAEIRDP-----TvgARRWLGTFDTAEEAARAYDAAARAIRG 754
                         9*******.**********9.....4459***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-22705764IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-31705763IPR001471AP2/ERF domain
PROSITE profilePS5103223.538705762IPR001471AP2/ERF domain
SMARTSM003808.5E-38705768IPR001471AP2/ERF domain
PfamPF008472.5E-12706754IPR001471AP2/ERF domain
PRINTSPR003673.1E-10706717IPR001471AP2/ERF domain
CDDcd000184.32E-18706762No hitNo description
PRINTSPR003673.1E-10728744IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1379 aa     Download sequence    Send to blast
MEPSPSEGPP PGPPPGMLGA TTPAAGQQAS AGGPLPGSTT MPGPGQPGQL GQPAAPGQQA  60
PPAFAVPGVP APGLVYGAPR PGMPAVQPNP LAANPAALQQ QTAAAAAIYS TLLRPPGTAG  120
TAPALTPAQL AQSLPPNVLA AMQGLQAAQA QLQATAQANA AAQAAHAQAQ AQLQAAEAAK  180
AAQQGASTNS RAASPEGNPN QPAAQAPPPG VVPGAMPALP RPPMPGAVPP APAPPSTVPP  240
SPAAAMQALV SAQAALQAAQ AQMAAAAAAA AAVTAAGQAQ AGAAAPGGVP PGQVPTPAQL  300
QAQAQANFQA QMAAAQQLRN AAAAAAARPP FPGAPMPGQP APGAPAAAPA PLGTPPSAPP  360
GSAPAAGLPQ PAGSLPPPGQ PGGIRPPAVS PAAASQAVAA AAAAAAAAAA AVAGVRPPAP  420
GGPLAPPPAP SPSPAPAPAQ APVPMQHHQQ HQQPGPGAVS QSPASPPAPA APTLPNPSTS  480
PPAPPAPSPP PPPAGLRPTE QSPPPGAIPP GGGLISSLPP PPLPPPGMAL PPGSDGAPPP  540
PDLSGMPPGL TLPLLGPDGQ PIDPDAPLTE QQQLQLSEAM QAQMEQQMQM MAAQQEMMAQ  600
AGMQFPPGMQ FPPFPPGMPF PPFPPGMQLP PGMQMGMPPL PMPPMQPPMQ MMQEEELEPE  660
SSDSDNDMTS PRKRREKKKA PRGGGGGGGG GGGGDDVVSK GKNKTYRGVR QRPWGKWAAE  720
IRDPTVGARR WLGTFDTAEE AARAYDAAAR AIRGPAARCN FPLSSSHDDH YHHHVQQQQQ  780
QQQQQQLEAQ AMAAAAGGHM GGPNGMGGPP MGLMHGGPMG SVPEDEPLPG GPGGMPPPMM  840
EQPKVKLPAA AGLKLRGLKQ KVGPKKGGMD EPLIQSSMPG GLGAADIHGA MSVSDAMAAA  900
AAAGGAAGGA MPGLNGSPGN PFQMRIKTGL TPNFSGWHGP LPPGVAGSLG GSAAMMATSL  960
GNSSGGLLAN FPPLPEWPPA GSMGSAASMM MLGMSPGAGM EAYGTSYGNQ YGKSVDMMDM  1020
CAQLLEAGGE VPPSLHDADG SDVAKAGGAG SAGARLHLHS MWREWQAGSL GSGANVVDPL  1080
ATLGSLRNEL VIPPDFKSEG PNAGAGDGDL DGVHEMDEMM ILGTTPDFGR PSNDFFKNLP  1140
NSFGTGASSI GKGAAAGKAV AAAAAAAAAA AGAGGAGGAG TGASSGTLTL APPGSVAAAA  1200
GAGAAPLPFG SRGNSPPSDV PDPGGAGGSP LTHMLLHGRH GLAADPALLG MGQLSSDGAA  1260
LGVGGNDEDD YLMGMSPDLP TGSGKGKQPP GIREPGFESF MKAHAAQAAA GAATPKGAVA  1320
AAAGGGGSSG APSLELPVAA AAGGSPNRDT AGTGDLLSPT ISFAAGVGGL DLPPPDQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19702766267ATERF1
3gcc_A2e-19702766267ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1671676RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre08.g364400.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DGR40.0A0A2K3DGR4_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.18e-15ERF family protein