PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre08.g364050.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 896aa MW: 88951 Da PI: 4.94

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre08.g364050.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.4e-10	323	363	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 g+W+++E +ll++av+++G + W +a+++g +++ c++ + Cre08.g364050.t1.2 323 GAWSQQETLLLLEAVEMFGDD-WGEVAAHVG-TKSQVACILQF 363 89***************88.*****.*****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16496	1.0E-35	17	258	IPR032450	SMARCC, N-terminal
PROSITE profile	PS51293	18.258	320	371	IPR017884	SANT domain
SuperFamily	SSF46689	3.9E-10	321	374	IPR009057	Homeodomain-like
SMART	SM00717	6.7E-10	321	369	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-6	322	361	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-10	323	364	IPR001005	SANT/Myb domain
CDD	cd00167	5.40E-7	324	366	No hit	No description
Pfam	PF16495	9.4E-17	741	818	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MEGLIGKRSG KVLPKDYEDP EFLKKLDPVV QQLDEDLPEA GFDAKKLAQL ICQLMQFQED 60 TLGRESNFKR QPKLPALLLR DFSPRGALYV IAAKCDDIMA ARDLKRIDWP NTAKRRENME 120 ILIGITRELE AEGLLRHPVV GLEPALGPEL CGRLGEVVRK MGGSVAAAPD DAKVTHRVCV 180 PPPGVSDAGR VKPQAMRCLE VRGDMACVHW TQLPDSYDEW VLARHAPAPR DMPGQPPGGG 240 PWRVYPRWIK DSELYNEYHC TKCPEIDLCP AAFAEGRFPP GTTAKDFVRL DASAKNAAGE 300 AAAAVGASGI AVGPAHGAPA PEGAWSQQET LLLLEAVEMF GDDWGEVAAH VGTKSQVACI 360 LQFLALPIED AFLDDMEAGV GPRAGPVAGA LPPAAGGGAA AGLRIGGAAA AAAAAAAAAG 420 GAGRAGAGGA GGGGGAAAAK ARSVARQAEW QGGSAGLPWA LTNNVMDEDL VPFAEHANPL 480 MASLAFLTSM VGPRVAAAAA QRALEYLSQD DPDLPPEEPP KPKLKPRPPQ LQLQHPPGAG 540 AAAAGAGGGG GGAAGAGAGA GTAAAAGGPT SMDVDGGAGA GVAPAAAPVP LSAAPSAAEA 600 LPLTTAPSVA EPMVVDGDAA ASAAAGAGAG AAGAAPAAAP AADGAAGAAP PGTAAAGAAT 660 EAAGGDAASA KAAAPAAPAA AAVPVPDSER AAGAAAAATA AAAGAPAAAA AGAGAGAGPK 720 PPPEPSAIPI SMARLKKAAA LGLAAASERA RLMADEQEAD MMELAAQIVE VQVAKLGLKI 780 KYLEDVEAAL ESERNQLDNA RKNLDEQRVS IRNTRRARMQ AGERNPPPAP AAAAAPAGLP 840 LPIPGMAPAT AAALAAAMQA AGAGGGGALN AQQQAVAQAA AMQAAAQVLQ QQMKK*

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MEGLIGKRSG KVLPKDYEDP EFLKKLDPVV QQLDEDLPEA GFDAKKLAQL ICQLMQFQED  60
TLGRESNFKR QPKLPALLLR DFSPRGALYV IAAKCDDIMA ARDLKRIDWP NTAKRRENME  120
ILIGITRELE AEGLLRHPVV GLEPALGPEL CGRLGEVVRK MGGSVAAAPD DAKVTHRVCV  180
PPPGVSDAGR VKPQAMRCLE VRGDMACVHW TQLPDSYDEW VLARHAPAPR DMPGQPPGGG  240
PWRVYPRWIK DSELYNEYHC TKCPEIDLCP AAFAEGRFPP GTTAKDFVRL DASAKNAAGE  300
AAAAVGASGI AVGPAHGAPA PEGAWSQQET LLLLEAVEMF GDDWGEVAAH VGTKSQVACI  360
LQFLALPIED AFLDDMEAGV GPRAGPVAGA LPPAAGGGAA AGLRIGGAAA AAAAAAAAAG  420
GAGRAGAGGA GGGGGAAAAK ARSVARQAEW QGGSAGLPWA LTNNVMDEDL VPFAEHANPL  480
MASLAFLTSM VGPRVAAAAA QRALEYLSQD DPDLPPEEPP KPKLKPRPPQ LQLQHPPGAG  540
AAAAGAGGGG GGAAGAGAGA GTAAAAGGPT SMDVDGGAGA GVAPAAAPVP LSAAPSAAEA  600
LPLTTAPSVA EPMVVDGDAA ASAAAGAGAG AAGAAPAAAP AADGAAGAAP PGTAAAGAAT  660
EAAGGDAASA KAAAPAAPAA AAVPVPDSER AAGAAAAATA AAAGAPAAAA AGAGAGAGPK  720
PPPEPSAIPI SMARLKKAAA LGLAAASERA RLMADEQEAD MMELAAQIVE VQVAKLGLKI  780
KYLEDVEAAL ESERNQLDNA RKNLDEQRVS IRNTRRARMQ AGERNPPPAP AAAAAPAGLP  840
LPIPGMAPAT AAALAAAMQA AGAGGGGALN AQQQAVAQAA AMQAAAQVLQ QQMKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre08.g364050.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DGQ8	0.0	A0A2K3DGQ8_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3305	2	2

Link Out ? help Back to Top
Phytozome	Cre08.g364050.t1.2