PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre08.g358532.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | GATA | ||||||||
Protein Properties | Length: 470aa MW: 48122.5 Da PI: 6.905 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.6 | 2.7e-16 | 395 | 425 | 1 | 31 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 C Cg+t+Tp+WR+gp g+ktLCnaCG++y Cre08.g358532.t1.1 395 CLECGATTTPQWREGPMGPKTLCNACGVRYV 425 889**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51038 | 16.088 | 41 | 194 | IPR001025 | Bromo adjacent homology (BAH) domain |
SMART | SM00439 | 0.0092 | 41 | 194 | IPR001025 | Bromo adjacent homology (BAH) domain |
Pfam | PF01426 | 5.5E-11 | 42 | 192 | IPR001025 | Bromo adjacent homology (BAH) domain |
CDD | cd04370 | 2.10E-11 | 43 | 126 | No hit | No description |
SuperFamily | SSF57716 | 5.7E-13 | 387 | 428 | No hit | No description |
SMART | SM00401 | 1.6E-11 | 389 | 440 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.69 | 389 | 424 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.3E-14 | 392 | 428 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.31E-10 | 394 | 449 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 395 | 420 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.8E-14 | 395 | 424 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MMAQAQPPQQ QPSLQVFLWL GAGQQRADGR IQYSSFRLNS TDYRVGDCVF LFPEDESYPP 60 YVARILSAFV DTQVQEGSDP HCIEVKWFER RVNLEPTTKG IEESEREVFE LEDTDVNPIG 120 CISGKCRIVK AHNYEEARLR RSAAATGGSG GGAGGAEAAG AGLGPSGPGP SSADPWFFCR 180 GYFQQTTNSF VAYTPDEMAR PDVALDVGLV DTAAHAHGAG AGAGHLAGLA GPGLGGGGAG 240 LSEQPPTPTR LRGPNTAAGS GPVWGLPHGH AGKAAALHSS HHSQHPHAGS GADPHHMADP 300 GEAGVCWGAA GLDGEGGDGG AGPEDDEEYS DPDNNHNDNR GGGGGGAGAG AGGRNHHYAG 360 GASGGGRARA AGGHHAAPAQ QQPSSKKQKA TGRTCLECGA TTTPQWREGP MGPKTLCNAC 420 GVRYVRSQQK AAGQKRGGHK NGQKTDAARG QGARTKRKPH HGGGSSGED* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre08.g358532.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DG77 | 0.0 | A0A2K3DG77_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP220 | 14 | 30 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 7e-13 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Cre08.g358532.t1.1 |