PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre07.g354500.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family HSF
Protein Properties Length: 1249aa    MW: 117501 Da    PI: 6.3982
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre07.g354500.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.83.5e-33171082102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d++++++isw  +g+sf+v++++efa ++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F++++++
  Cre07.g354500.t1.1  17 FLRKTYELVDDATTNHVISWGPSGKSFIVWKPSEFAANLLPLYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEYFQQHNRD 98 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll +i+r+k 
  Cre07.g354500.t1.1  99 LLLTIHRRKP 108
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.2E-3710100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-3213106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5813106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1249 aa     Download sequence    Send to blast
MTGEGKGGGN QGQPAPFLRK TYELVDDATT NHVISWGPSG KSFIVWKPSE FAANLLPLYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE YFQQHNRDLL LTIHRRKPAS TVTAPGGPGG  120
VGPGAPGGSG SSTGPGTGSG SGSAQQKSAP GPPVSPLQQF TSQVSSEAGQ PGPPGPPAPA  180
GAPSAVLPIP LPPGVPPAAA AAAVAAAASA PFSLSPPFPL DLGIAATLPL FTAPPPTAGA  240
GAAPGLTFPA LTIPPVGVMV GPGGPLATGP GPILSTGPGP GVTPSAGSAF SRPLLPASGS  300
GAGSGSVPSL KTELPPPHAL GPLLSPQAAA AAAAAVAAAG GPSPPPAQLQ QVLAALASQS  360
GTPGSAAAGQ LARDGSIEVG SGWPAGSGSG MTDGAAHAQG TAGNTNAATS NSPADAPGGA  420
SAAAANGGGP RPSHSHSSNN APSASSSDAQ QHQQQQSDPM LAEDEYGGQG GAGSAGKAAK  480
RSRADMYTSA RTAGGGGGGG GSVEAALAAV AAGGLPSASG LPSASGLASG ALPSGGGGMG  540
HLTSAGLPSG GGGLVGLNSG GGGPGAVGLH SAALQLLGTS PPPGGLAGLS GVTGAAAATA  600
AATSGPASLT SFDAAGNPLP AGITRPLPQH HAMRGTTAAL LNEMAGQLGR LSALAREVEG  660
LKEENTALKR SMEALTHAYT GTGTGGGGGS GSAGAAGPSA GSGGMGAAGL RSSGAGAVAG  720
GCGGIGLASG PQGVSLAALA GELGMGMDEE AGTGNGVTAM DAAASGDGGA AAGGGGGASD  780
GSGGVPSDLG AGGSSSGAPA VNKDGTTATP LTQAVEEQGK RLWDQKLRHD ELEKQLLAQK  840
ELSARQAAKT AALELALAAN SAKAVHDAAF LGRVLEERVS AESGNMRGRL EAQERANKAA  900
HDVNSRLEAR VAELEAQLRA LGQDTAPGSS NRMSQHDNTN TNNQQQPHLQ QPTGAEALGS  960
RTFAGTAAAG DVGSQHGQQG QPALLDGARN GSASGGAAAA AACSPPPPGT GSAGFVAFMQ  1020
RLGSGAAGLG SGQAGQALGL GAAGGPLGSG AAGLGSGLGG GLSGGLSGGL SGALPLEADL  1080
YAKTIEDRLW GTVEQIVNSA PDPAHGARLV LQVAKARQDA YAAAAVVGAA AASTSTGGRS  1140
TSSGGNGGAV SGAGNGTSAG CGTGDSNTSG PSGSNTPGGA VAAAGQRGAA SLAAAANGVA  1200
GSRGAAKEDG QSTEGSGSCP PPSVPVAGTA AAATAAAAAG GDMMDTGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A1e-21121063106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A1e-21121063106HEAT-SHOCK TRANSCRIPTION FACTOR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre07.g354500.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DLK80.0A0A2K3DLK8_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-42heat shock transcription factor B4