PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre07.g353500.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family ERF
Protein Properties Length: 1393aa    MW: 138383 Da    PI: 4.5833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre07.g353500.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.6e-18876925255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp ++    r +lg+f++aeeAa+a+++a++ l+g
  Cre07.g353500.t1.1 876 HYRGVRQRP-WGKYAAEIRDPLKG---GRMWLGTFDSAEEAARAYDEAARMLRG 925
                         6********.**********8543...7**********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.08E-28876933No hitNo description
SMARTSM003802.8E-36876939IPR001471AP2/ERF domain
PfamPF008471.6E-11876925IPR001471AP2/ERF domain
PROSITE profilePS5103222.669876933IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-20876934IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-30876933IPR001471AP2/ERF domain
PRINTSPR003672.6E-9877888IPR001471AP2/ERF domain
PRINTSPR003672.6E-9899915IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1393 aa     Download sequence    Send to blast
MDFIESAYNA EQARRRALLQ QQQQQQQQQQ QQQRAAGYAG GNAAGGGQAE IAAAAYEAGQ  60
MAVAAAAARR MGVPEQIINA LNVKQQQLQQ QQLILQLQQQ HQQHQQHHHQ QRQQQQQQQQ  120
QQQLQLQQQL RANGFGGQDA SAVVREAEML LREHQHQQQQ QRQKQMQQHQ QQGRQQPAGA  180
AAQQQHQREQ QQQQQWEREQ QLLRALEGSL AAGRAGGNGG RHVGRGQDES EMAERRRLIG  240
HQLEQQQHQH HQQQQQQQQQ QQQQQQHHQQ QQQHRQLLAA ATAAVAAAER GHMQLGVRVK  300
QERTPPSPGP GPPAPPTRQP SHHQTPPVPQ HRPATPTSAT QAAEADLLRP AGGGGGGGGA  360
GTGRGGARLP GLPGLPIHMP LMPTPDHLAW RVTKDGMLQI QLPLDPLDWT TAAEEAPAPD  420
PGAASRTHPV IALALTPLCL SSGMPIGDSC LLPLAEVLGH IQQQLTQRAA GRRDTAELRS  480
PGWDMFHPPE AEAAAAAAAA VAAAAPPRSP TDSQDRGADG KPAGQQPQPY KLQLLRLQDG  540
ATLEAAAGAA GGGGGGAAPV PVAPALKLRP LDSKAATGPP RGGAAGGLGA GGLVDDADDD  600
SAFNHLYNQH YDAAAAAFPG GLSAPSPIAQ LGLALVANTA SRLGATINGR APPAAATATA  660
AALGGGGGTG GVLDLSGGTS GAGSAVDQVC ELLRARRGAA GAGGAAALQA QGQGQGQGRG  720
HRVVSPALAG LPHIVVPLGA RRQPPSPAPP TPPAAAAVAA AAAAEAALNG GLAALSPAHL  780
ELLRQVKDSM VAHQTQQVQQ PPPLAAAAGA AANARAAAAA AADDVSTDDE KPARGRGGKG  840
GGRAGGGGVL TVEGPQGQVL KLKPGAAAKR SRGAVHYRGV RQRPWGKYAA EIRDPLKGGR  900
MWLGTFDSAE EAARAYDEAA RMLRGSAALC NFPLPGERGY GGQAGGGGGG GNGAGGGGGD  960
SDEEGGAQDA YEEDDGAAAG EAWIGGGGGG AGGSGGGAGG SGGVGAFRPR GGLGGLSGLD  1020
AIAAAAEAAE AAEAAAEAEA AAALVAAGGL AGARGEQEAD DMAAEAAAAA LLGAVAAANG  1080
RPAKRSRVSP AHGAAGAVGA VGAAGAGAGL GADGAHEDDP LLGPPPGRVP PGAAGAATGF  1140
GLELAADADL TAAAAAAQDL DGDADAVAAA AAAAATAAAV EMEAQVAAAA AAMAAAPDVA  1200
IDLGGEPDVE LGGELEAVAV QGVFGAELLG AAGAEAEAEA DVDIPAADAD NGAAADVEPR  1260
SLADAADVDV AVEETAAAAT DEAVAVAGAA DDGAAADGSD GGGEPDDDGD ADSIGVDADE  1320
YEEQVDVEAE GEVEGGPVEE AHAVAGQHER GGEGCDHGGA DSDGAEAAAG GAADTDAADV  1380
EMGGEMEAGD DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23876934564ATERF1
3gcc_A5e-23876934564ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1840847GGRAGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre07.g353500.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DLG60.0A0A2K3DLG6_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-17ERF family protein