PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre07.g335150.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | SBP | ||||||||
Protein Properties | Length: 1406aa MW: 140700 Da PI: 8.4476 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 84.7 | 1.2e-26 | 25 | 100 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +C+ve+C dl++a + h+r+++C++h kapvv+v+g++ rfCqqCsrfh ++ef+ + r+Cr Lak +r+r + Cre07.g335150.t1.1 25 RCKVEQCGIDLKSAPKTHQRFRLCNTHIKAPVVVVDGVHSRFCQQCSRFHPVDEFNGTNRTCRMMLAKNRARQRST 100 6******************************************************************988887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-26 | 21 | 87 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 22.965 | 23 | 100 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-25 | 24 | 101 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.1E-27 | 26 | 99 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1406 aa Download sequence Send to blast |
MDLPSITTRR DVIDETTKRV SPPLRCKVEQ CGIDLKSAPK THQRFRLCNT HIKAPVVVVD 60 GVHSRFCQQC SRFHPVDEFN GTNRTCRMML AKNRARQRST TSGPGSGGRS AFGRRSMQSD 120 EEDEELSDLS DSGSDERGGT ATRKGGKAGG AGGRASSSGK AASGGNKSGG ATAAGAVAAS 180 AAAVNSQPLG VQPPTLLRRL SAAGGAGWGN SGNGSGALGA LAPGGPLGAA VVGGVGPSGT 240 SSIAAASQQA GEAQALLGQG HQGPAPMELG GGGGANGSHH AGHGRHALLG HLGLGDGTGG 300 TGAGMFARSS APPELGAGNR AAGGWNGLDN QRHQQQLQHV QQQQPLPYRP AYLEPQLLQQ 360 RQQQHHQQHE RYQMQQALQQ QQQQQREERQ LQQQQQQQQQ QQQQQRQQHV VSGGAGYVQG 420 PHSGGQVLGD FGSGVGTRSG NYGAGGAPQG DGVSLAQQQQ YGAHAPQHGH AHVSPFAARP 480 GMTAATGASA ASSPQVVEYH RPLSVTAVAG GMGGEGGGGG GGGSGHVPFL YNAGVTGAGA 540 GGGASMFARM SAPVSATSPL LRPMGGRGPG GVSGGGAGGP QAVAAALMGR NSLAGSLVRV 600 ESIKRRRSGD GMGVAEEQRL LEQEGAPSPA IRHCSSSGVR EPMLDGALQT AGSTGSGLGS 660 GLGSGLGSNS AFQRASLLQL QLQLQQLQQR AATTGGIGLP MDARLLPGGA SGPSQGTGVS 720 LAAPGADVGG LRGGAAAAAG ATGLQSEAAL NAALTALSAQ QQALMQQQQH QRELQAMLQQ 780 QQYQLQQLMQ EQDVEPEPST SAASAGSNDS PACGAMSGIG GVLQSVAAAA AAGEELRTVA 840 LRRSHHQRNA SGGSASLAQA AVAAAAQRSS GATTPAGPTT AVLMIAANGS RPMTPRCEAA 900 ACLGALALGD GGGGGSGLGS AGPGSAGPGS AGPGSANVAT GSVGAAVPAG VVNEDEGLAA 960 LAAKWRREAE EGNSLQAQAA RQAQRYAAGQ PVKTEPDGLG VGGGVGPAGP LLQPPAGTMT 1020 GAMQPAALGG FAAPVAGGAA GGFVCGPDGK LEHGSEGCSG ADPARPQIAT ALTPGMAGGA 1080 HGAAQAIGVH GRNGVAGLYP GGGAGALDAA QGDGGYLRTT QSEPAWANPS GAPHMQLQPQ 1140 QQQYGLAQPQ QLSVGAGPRP QLQQQQQLLR NSMLRSSSPL GPGGPSFARS SGGGVGAPSG 1200 LGMASAQQHW GLQRLGGGMS GMAEGPGDGK KAVGEETEEQ LQLLLSDLFG GQGSAGGPGG 1260 HRAAAAQAAQ HTADGMPAMQ LQRQYQQHQQ QPLLSEHQQE QDLQQQDLQQ LGIARERQRR 1320 LWADLQALQA QHEQLQQALL AGQANGTHDA QLVALLQQQS GALETQRAQA AAGEEMLHRM 1380 EAEIMAAAQQ RQQQGGGPGM QWSKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-16 | 26 | 98 | 11 | 83 | squamosa promoter binding protein-like 4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre07.g335150.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DK76 | 0.0 | A0A2K3DK76_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-19 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Cre07.g335150.t1.1 |