PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre07.g332250.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

bHLH

Protein Properties

Length: 659aa MW: 64392.9 Da PI: 6.4286

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre07.g332250.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.6e-10	177	231	3	48
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAv 48 ++h+ +E++RRdr+N+ +e+L el+P+ + ++ ++K K +iL ++ Cre07.g332250.t1.2 177 VSHSTVEKQRRDRLNDLIETLGELVPPmDAngraragpSGEGPKRPKHAILADVI 231 58*************************8889999999999999999999997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-8	171	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.87E-6	172	231	No hit	No description
PROSITE profile	PS50888	11.636	174	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-8	177	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-7	178	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-4	180	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MTETSGPALS GAGEMNWFPS DAPQNAADRR CDVGELALGP AAPFNDSLQA QLRGSAAGIA 60 EQATATDSST AEASSSAPTP ASDASGSPPT CATGHEANCS MISPPCYSAS QLLPALAAAA 120 AAAAAAAAAE PAVPLLPLTA AGRSAVAAAA SGGGGAAAAA FGAVGASTTG GKRSAPVSHS 180 TVEKQRRDRL NDLIETLGEL VPPMDANGRA RAGPSGEGPK RPKHAILADV IIAFRRVQQD 240 NQGLRVHLAN ASRLLAAAAA GMGNSNGNGV NGAPQAAAAA AAPVGPAQLP QHHPQPQYQQ 300 AATAACGMYG SGTGIDACDS QLQQLQHQQH QQQMQTLQRA GSCAPASSAA AGGAVSPSSG 360 GAAMAPVPTG CSGATAPTRL AAPFPGLSFP SAAAASACWQ QQQPQQQQPL AEVAADAFPS 420 APLMSFPSSA AASVAGAGCA AAADMSGLLQ QSSAAAGNCY SASTSPHASS PLPTQPSLCG 480 HSDHAGSGLP LMPSPGSFAS VAAPAAPPMP AAAPAPPPVQ PPPSSWLIRV VCPPHPSLMN 540 VAASALGSAG PAGSVTLCAV NLIPQPCGRV SLEMSVSCDA SLLPRIQQDI TTAVHDITAA 600 LQQTTQQQQQ QQQTVQQQID MASAAAAAAA AAAAGLKRPC DGAADAFAPA AAAKRVCA*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MTETSGPALS GAGEMNWFPS DAPQNAADRR CDVGELALGP AAPFNDSLQA QLRGSAAGIA  60
EQATATDSST AEASSSAPTP ASDASGSPPT CATGHEANCS MISPPCYSAS QLLPALAAAA  120
AAAAAAAAAE PAVPLLPLTA AGRSAVAAAA SGGGGAAAAA FGAVGASTTG GKRSAPVSHS  180
TVEKQRRDRL NDLIETLGEL VPPMDANGRA RAGPSGEGPK RPKHAILADV IIAFRRVQQD  240
NQGLRVHLAN ASRLLAAAAA GMGNSNGNGV NGAPQAAAAA AAPVGPAQLP QHHPQPQYQQ  300
AATAACGMYG SGTGIDACDS QLQQLQHQQH QQQMQTLQRA GSCAPASSAA AGGAVSPSSG  360
GAAMAPVPTG CSGATAPTRL AAPFPGLSFP SAAAASACWQ QQQPQQQQPL AEVAADAFPS  420
APLMSFPSSA AASVAGAGCA AAADMSGLLQ QSSAAAGNCY SASTSPHASS PLPTQPSLCG  480
HSDHAGSGLP LMPSPGSFAS VAAPAAPPMP AAAPAPPPVQ PPPSSWLIRV VCPPHPSLMN  540
VAASALGSAG PAGSVTLCAV NLIPQPCGRV SLEMSVSCDA SLLPRIQQDI TTAVHDITAA  600
LQQTTQQQQQ QQQTVQQQID MASAAAAAAA AAAAGLKRPC DGAADAFAPA AAAKRVCA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre07.g332250.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DJZ2	0.0	A0A2K3DJZ2_CHLRE; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	Cre07.g332250.t1.2