PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre07.g330050.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

C3H

Protein Properties

Length: 709aa MW: 75345.7 Da PI: 6.353

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre07.g330050.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.7	2.4e-09	208	232	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+++ +tG C+ G+ C+F H+p Cre07.g330050.t1.1 208 QRLCKYWVATGRCPKGEACQFTHPP 232 69*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.263	205	233	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.4E-7	206	232	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-6	208	232	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-7	209	230	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.22E-5	209	232	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MDAPLTILRG VVTFKRPLSK KLIFYDLEVA DHGAGPADEA ATNLWAELLV KADGDLLSQE 60 QARAIRDAVR LGDSVEVTGR HEDPSPSAQA ETSGHASALL QQHQHRTFVV QAVRVTARWS 120 EVHPGAHFVP RPAPWSRKPQ LQQLEQQPPR PRAPLPVPTG QDAQSKQAAS RERGAHLRSE 180 ADDANQGQQE RAEGQQEAGA GPSSSSYQRL CKYWVATGRC PKGEACQFTH PPARGGASGA 240 QQTFVQSRRA ERLAAAAAQG FVHEAGDGAK RRRAAVLAEW LVATYGRDFL NSGTGVMDVA 300 GGRGALTFHL TLHCGVRCTL VEPRRPAALS RQQHRDLAAA GVKAADFRLA QLRVRFGPEL 360 WRRGQQHAQA SLAALEREGQ RLLPAWEEAE DAEDDERGQQ REGQAGASIS TPTEAPADAP 420 ELRDEAEQLL RGCSLVVGLH PDQATDSILD FALECGKPFA IVPCCVFPRL FPHRRLRQPA 480 LDGAGAAGSA VAPGQSGPAA AGSRQSSGTS AVSLAATPPP LSQLHLRSDR GALSGEEQEQ 540 EEVPVESYTQ LLAYLRQRAE DAAGLTPRAR GRRRHTDQRT EQRMEQRHDA IGLEAGGSDL 600 EEPDVAGAQE ADAAEAAAVG STAGTLLWLE EQAGRWEHCA QEAGAPGAWG QWQAEVLASA 660 GQAAGGTGDQ GQGTVGPAAA ARYACVCVAK LPFTGANQVV FALPAEAS*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MDAPLTILRG VVTFKRPLSK KLIFYDLEVA DHGAGPADEA ATNLWAELLV KADGDLLSQE  60
QARAIRDAVR LGDSVEVTGR HEDPSPSAQA ETSGHASALL QQHQHRTFVV QAVRVTARWS  120
EVHPGAHFVP RPAPWSRKPQ LQQLEQQPPR PRAPLPVPTG QDAQSKQAAS RERGAHLRSE  180
ADDANQGQQE RAEGQQEAGA GPSSSSYQRL CKYWVATGRC PKGEACQFTH PPARGGASGA  240
QQTFVQSRRA ERLAAAAAQG FVHEAGDGAK RRRAAVLAEW LVATYGRDFL NSGTGVMDVA  300
GGRGALTFHL TLHCGVRCTL VEPRRPAALS RQQHRDLAAA GVKAADFRLA QLRVRFGPEL  360
WRRGQQHAQA SLAALEREGQ RLLPAWEEAE DAEDDERGQQ REGQAGASIS TPTEAPADAP  420
ELRDEAEQLL RGCSLVVGLH PDQATDSILD FALECGKPFA IVPCCVFPRL FPHRRLRQPA  480
LDGAGAAGSA VAPGQSGPAA AGSRQSSGTS AVSLAATPPP LSQLHLRSDR GALSGEEQEQ  540
EEVPVESYTQ LLAYLRQRAE DAAGLTPRAR GRRRHTDQRT EQRMEQRHDA IGLEAGGSDL  600
EEPDVAGAQE ADAAEAAAVG STAGTLLWLE EQAGRWEHCA QEAGAPGAWG QWQAEVLASA  660
GQAAGGTGDQ GQGTVGPAAA ARYACVCVAK LPFTGANQVV FALPAEAS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre07.g330050.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001690631.1	0.0	predicted protein
TrEMBL	A0A2K3DJT6	0.0	A0A2K3DJT6_CHLRE; Uncharacterized protein
STRING	EDP05890	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP348	8	11
Representative plant	OGRP18289	2	2

Link Out ? help Back to Top
Phytozome	Cre07.g330050.t1.1