PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre07.g325738.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | SBP | ||||||||
Protein Properties | Length: 1982aa MW: 197762 Da PI: 6.3557 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 76.5 | 4.4e-24 | 101 | 176 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C+v gC l+ +k+y+ r +vCe+h +ap+vlv+g+ rfCqqC+++ ++ ef+ +k+sC L++hn+r r k Cre07.g325738.t1.1 101 CEVTGCGLCLEGLKRYYIRMRVCEKHLHAPAVLVNGTISRFCQQCGKWQAVAEFEGSKKSCIATLERHNARHRAKV 176 ***********************************************************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 21.589 | 98 | 175 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-22 | 99 | 161 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.76E-23 | 99 | 175 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.5E-26 | 101 | 174 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1982 aa Download sequence Send to blast |
MSGRPRKRVE EEAAAEEAWT LDNYAWDPQQ CVARKRTKTT EGHSAQAVFG AHSYLEGSGK 60 AAMLAAGSQL LQQQLSAVPC IEPLPELITV NPEECDPATH CEVTGCGLCL EGLKRYYIRM 120 RVCEKHLHAP AVLVNGTISR FCQQCGKWQA VAEFEGSKKS CIATLERHNA RHRAKVQARL 180 AEQQTRGGAA AAEKAAAKAA KSAAAAATGG AKRRSGSAAP KGRAAAAAPS TSGASGGSAA 240 GNSDNAKSSF GMADLMGTAA SAFAAGGLMP YPPAMDNGGT TNLLQPTFGP WDAAGGANGA 300 GGASSGAGGA SSGAGGLPMR PPITTGLAGA GAGSAGNGVS LAGSGRLGSV EVTGGFVRLP 360 QQQQQEQQQL LLPMLMSQEG VEIDRALHAP PHDAFRRASS MNLSQQQPLL LKPPQPPEDV 420 RMALGAVKQE LLLTQPPALA GANAPPPGAW RQGYPMGGPA AGTYDSGLHG YAGSGGYAST 480 YPARMGSGMP GGPFGGGAQH AQHGYSQPYD GHSTPGHMQF GGGYPPQAAA GYPPHAQHQD 540 QFQFQQHHMQ QQQQPYLHMH QQNVHQHQQV QGYPANSPFP AQQQHTSYAA TPQQNQGTLF 600 PQQQYQQQYQ YQHQQGAAPA AAGNDASFNH ATTGSRGSAP SAATAGAMPG GGATGAATGA 660 TPNASSGSDT SGVQSQATAR QAMAAAAAAA AAASGGAPQP RGSSGTAASG ASGSAFANSH 720 GGGSAAAAVG AGAGAGGAAA MSDSGALATR LNNVMAELST LVAQVAHLQQ PPPPALAAPA 780 AGQALPARND SAPADMPLPL RLPAMAAVDA ADAAAGTAGH SPRSVSAQSA PTRPGSDAVT 840 SSARAGSSSL SPIMDAALAM MSQVSELAAA LQPGAEPGAA ALAPQQQPGF RPAMWAVTTG 900 MPAAVQSQPQ QQQMLQQPGS GSSGWGSQQQ PQPHQQHLGE MAASSAAAKP FPTEFTAAGP 960 GFVVSTGYPG SSSGNGSGGG AAPSSNGNGS ASASQQQAWI PPQSISAPYV PSAAPGQQQS 1020 LPPAFAGAAA AQTPYSAASH ADSPSTTVSG SAAPSPTQPQ PQVQPQSLHP GGGAAADAKP 1080 GDVSAAAAAA AFAPDADGDD LDEQLLGELF DYLEEENGAA AAAAAAAATA AGSGHATIAV 1140 AAQQAVGNYQ QTMAAQPYPL PAASLAPPPA AAAGGAMAAP PPLVEDDVDE REFTRVSLKA 1200 MNVLPHELPP SLRANLRRWL RESRAEALQA TLRPGCLQLV VDVARSLRTP AGAPVSGDLA 1260 SVLIPPHDAD QAAADVFRIL GQRLRDTYVQ VGRQVLQIRV GERPIVLSWE QAAEDGGLDN 1320 ARFPELFTCS APAVCAGADV SLELTGKHLC HPSTKAFARL RGHDLPAARL PNPSPPASPS 1380 DPATSFPSTS EPEAGTEADK AAGSSRADPA TSSGSLLRVR VQLPAGAVGL MVVEAGVGHL 1440 LGGWWPVLVL PAGRDAAAAE LGELSTQAQE AARAEAKAAS EEAAAAPAPG GTAKRGFERL 1500 VRDLASVLET HADVCASTSP SSSAHATSTA TPASPPDTAT GASSSSPHVA RSAAGATSPG 1560 AAQPSGSTHT RSSGDGTVDA STTAASAAGW SMYTTDTLTG TTGAGSTVAS TLHTLTTTTT 1620 TGPRGGAAHH GGAHAAGAVG AGGFPGAGTA HAGAPVRLSS PTHSVDGAAA APARAAPVVE 1680 PTADAVRKAL ARSARLLRYT IARGRPHLTA LLLEAAHGLA AFPGALPAAA AAQSASAFMA 1740 AGIDLQALLP LAVLSGSVAT VDVMVGFAAA VLRAPLRLDL PHGPAGLSAL HLSALLRDGG 1800 VMASHLVASQ PWAAWSWVCL GWQPPSEGPR APAAATAAAG AAAGAGTESA AEKEEVVAKA 1860 EDKEGGDGAE KEAGEEEAEA DEEEEEAEEE EEDLLAPVPL PTKLTPGALC VLLGQTAPLQ 1920 RALALVQQAG QRRRLAAAGA ASGSPGESDV TAALVGAVQA WGRTGAALMA ALCEQLARQR 1980 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre07.g325738.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DJE7 | 0.0 | A0A2K3DJE7_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 | Representative plant | OGRP4828 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-17 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Cre07.g325738.t1.1 |