PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre07.g323000.t1.2 | ||||||||
Common Name | CHLREDRAFT_206363, DP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | E2F/DP | ||||||||
Protein Properties | Length: 647aa MW: 67124.9 Da PI: 8.8611 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 82.6 | 3.2e-26 | 153 | 231 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 +k+Lr++++k ++ek+e+ g++t+neva+eLv e d+kn+rRR+YD++NVL+a+++i+k ek+ei w+g Cre07.g323000.t1.2 153 SKGLRHFSMK---VCEKVEAkGRTTYNEVADELVGEmskmeamnkngqyDEKNIRRRVYDAINVLMAMDIIQK-EKKEILWRG 231 59********...*******9****************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-41 | 149 | 235 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.7E-33 | 151 | 231 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.6E-24 | 153 | 231 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.94E-20 | 154 | 232 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 3.58E-38 | 236 | 340 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 7.7E-57 | 238 | 390 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 5.49E-36 | 238 | 377 | No hit | No description |
Pfam | PF08781 | 6.0E-28 | 241 | 345 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MDGPQVKLEP GAVAPRTGTE LDNGAFAQEL QDLGLLDFAQ DCDFSRFAAG TGGLPPSARH 60 PSGLAGPVVG HNNPPPQPTN TLEIQQCQQT NQATDLATTR ALQVLASTRL QLNALQQASY 120 TPRPTGSAAT DGSGSKRRKT SRGADASGSR GGSKGLRHFS MKVCEKVEAK GRTTYNEVAD 180 ELVGEMSKME AMNKNGQYDE KNIRRRVYDA INVLMAMDII QKEKKEILWR GFPRLSCNSA 240 DRVKAERDAK IKEVEQKQLY LQDMVEQQKA LKKLLERSAA RQSNGANTSE TKLFLPFILV 300 QAKPDATVEV KISDDMMDVQ FDFYHSPFQI HDDSHVLKKM AEHQGRQPPP PLPNQPPTAG 360 ALAGGLPPQF PPGLGVPPFL PPPLTNGALH GNLLGGMHSP MADHAHLAQL AQAHGNPLTF 420 GFAPPLYTHP SGQHNHHQHH HHHHPQQQQL QQPHQLMQQG GDSGLGGVSR PSGSQGGAPG 480 AAGTVAGQQG AGGGAGPGAA GPAQLLQALQ AQQGPQQGRR SSGGAPGAPG GMGPGGMPPL 540 PGLAGLPAAA APAGPSAALG PAGGSGQLLA PQLSGQMSGS LPLPPVLAPP PSLGVLPLLP 600 HAPPLNAGAL QLPPGLASAL AAPPPLTLQP GPQGPSQQAS AFPLMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 5e-31 | 148 | 233 | 5 | 90 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Cre.8970 | 0.0 | normal conditions |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre07.g323000.t1.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ417491 | 0.0 | DQ417491.2 Chlamydomonas reinhardtii DP1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001700867.1 | 0.0 | DP1 transcription factor | ||||
TrEMBL | Q1ZZK3 | 0.0 | Q1ZZK3_CHLRE; DP1 | ||||
STRING | EDP07121 | 0.0 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1599 | 14 | 17 | Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 2e-63 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Cre07.g323000.t1.2 |
Entrez Gene | 5726416 |
Publications ? help Back to Top | |||
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