PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre06.g297150.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 1902aa MW: 186356 Da PI: 5.8423

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre06.g297150.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	68.4	1e-21	1766	1814	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +i+l dl+kyF+lp ++AAk Lgv+ T LKr+CRq+G+ RWP+Rk+ sl Cre06.g297150.t1.1 1766 DITLADLRKYFELPNQEAAKRLGVSGTHLKRKCRQLGVLRWPQRKLMSL 1814 79********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.087	1749	1834	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-20	1767	1814	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1902 aa Download sequence Send to blast
MLEQRSAGAG IPDMAGVHAP PPAEAGELLY ASRLKTGPAG NAAAFATSVQ PPMHGTAADK 60 SAPALLTAQR GGNGTHAGHG TAQPQQLVVD AGSGGYGGGE VDAPPAGIRT AAAVAAMAAV 120 APAASDAAGL VQQQRQQQPS ETGAVAFTSP TVTLAGVGLS HGVAAGLPRL PAAGDTQLAC 180 AASADTSTAL PGLQWLRPGC SEGAGHGAPL PLVESEVTET AAAPGAAAAA AAAAGDAETE 240 DEAETEDADA AAAAITHGAV QVAGAGQVAA ARATMQDVAE EQEAAAAAHA PDPRVVAAAH 300 AALPVPFRAD GPGLGFAFDD GPRLPGPGAA GAASGTGVGG GVGGVGGDGD RRLHEAGAQA 360 AAMDAAGDTA RPPLHPLQSE PRGTAAPAPA EAAPGARAQS PQPPQPPQPP QAPQPPQPPQ 420 PPRAQPDDAD DAEAVELLLC MRQTSAAQPM DLGDLDGAVA APAAGAARPM TDAGAGPGSP 480 HDVDTLGFGG GGRGGGDAEG AATSSAGGSG SAGGGGGAGR GGRGRGRGRG RGRGRWGRGG 540 GGRGGRGAGT PSARTSGAGT STPQSHEAGY RGLPRPHGST GGDPHDRDND RGPDAEDAAD 600 DDDNDHENDL AVNPLEPLGR GHQLRRLRPR LDAAIGLAAP PHALLPHLSV PQHMAAATAG 660 FAPSGPGHLH PALSAPMPLS ALATGLSGGS GSGRPAIAAA ACSTGSGVGG GSGNATGSHV 720 NRARLLQILN LATKQQQQQQ QQQQLQAGAA AGRGTMTPAR YRESLQRLQS RRHQLLAQQQ 780 EITRQLLAIE EEEAALKAGM EEAAMAELGA AGAGLGLLGG GLGLGLGMGV AGGRPGLGVD 840 EDGEGGGGSG EAAEPAEGEE EQLGRGGAGV GAGVLPSWAA AAAAQLHLHA ALGTPQRSAA 900 PQRPPAAATA LAPHSQPKPQ SQARPQSQPR PQHRPQQAAR QQAAEPPLAS VPAGPLAPRQ 960 QQQPPADLVP PGLAAWPNSR LLVADGGVAE DCGAQTAAGM DTGTPGTEVP GAAAEAEAEA 1020 EAEMAAGLAL RQGGAAAAQA LADMKAEGPA GDAPAGPAGP LGADGAAAGG GGVLSLDAHR 1080 GSSGSSGSGA AAGALRPLLQ SPSRLQLELE LGGALRQQGQ LKQEHGQEQP QQQQPHLQQP 1140 PPPPPPQQQQ QQQQQQQQQQ QQQQQHVQQP VLEAGASERR VRPRLGPEGG SEAARQQARP 1200 PGRGGDLDPP PPAAAGNVEA LLGSAAEPPA ASLIRLQQLQ QLQQLAALQA LHPNQQPGLA 1260 AAAGAAAAAA AAAAAGVESG DATAEQQPQL LAQQSQLQQL HLLQHIAAQQ QQQQQQQQQH 1320 QANSFRPQPQ LQLQPSQSLP LHSAGGGGAD GGAAEQMVSL LQRQLLLQQL QQQQQQQQAG 1380 LGVSPAQYRS EADAAMLAGR RADLGGGGSQ PLPAGVAACE GGGAAAGGGG PGLRSLPVDL 1440 SLLPPLMQHQ LLLGLRLGRA ESVGSGGGGA GMAGPGAGVG GGMQGLGLLG ALGPHELGGG 1500 LEDGGGAGGG GVLAALLPPR PSIGAGAGGV GGGDGKKLPA KRGRPKGSAN NTSSVFDVDY 1560 SLTPAQARLA EAAAAAAAAA ALTSGTGAGA LTNGTGAAGT ATMVRGGSTA TGIGASGTVE 1620 VSGKRGALKP QPQQQMTVAG PAAVAAAAPS QPAQPRSQPS QPQTQSQPQP PQTQQQQVQT 1680 PRPPQPQTSQ PQSGRGRKRS SSGRGAGGSG GSGGGGGGGS GGGEDDSDDD DDEDDDGFDG 1740 PDDEGEGLGG GGGGGSGATG RGLPADITLA DLRKYFELPN QEAAKRLGVS GTHLKRKCRQ 1800 LGVLRWPQRK LMSLRALAAS IQSDARLNEE SRQALLAQVA RNHQSIMDDP NAPLAAGLKV 1860 TRQVQYKQTF DRRTKGSGPG CGGGGGGGGG GGGGESGSGG Y*

Sequence ? help Back to Top

Protein Sequence Length: 1902 aa Download sequence Send to blast

MLEQRSAGAG IPDMAGVHAP PPAEAGELLY ASRLKTGPAG NAAAFATSVQ PPMHGTAADK  60
SAPALLTAQR GGNGTHAGHG TAQPQQLVVD AGSGGYGGGE VDAPPAGIRT AAAVAAMAAV  120
APAASDAAGL VQQQRQQQPS ETGAVAFTSP TVTLAGVGLS HGVAAGLPRL PAAGDTQLAC  180
AASADTSTAL PGLQWLRPGC SEGAGHGAPL PLVESEVTET AAAPGAAAAA AAAAGDAETE  240
DEAETEDADA AAAAITHGAV QVAGAGQVAA ARATMQDVAE EQEAAAAAHA PDPRVVAAAH  300
AALPVPFRAD GPGLGFAFDD GPRLPGPGAA GAASGTGVGG GVGGVGGDGD RRLHEAGAQA  360
AAMDAAGDTA RPPLHPLQSE PRGTAAPAPA EAAPGARAQS PQPPQPPQPP QAPQPPQPPQ  420
PPRAQPDDAD DAEAVELLLC MRQTSAAQPM DLGDLDGAVA APAAGAARPM TDAGAGPGSP  480
HDVDTLGFGG GGRGGGDAEG AATSSAGGSG SAGGGGGAGR GGRGRGRGRG RGRGRWGRGG  540
GGRGGRGAGT PSARTSGAGT STPQSHEAGY RGLPRPHGST GGDPHDRDND RGPDAEDAAD  600
DDDNDHENDL AVNPLEPLGR GHQLRRLRPR LDAAIGLAAP PHALLPHLSV PQHMAAATAG  660
FAPSGPGHLH PALSAPMPLS ALATGLSGGS GSGRPAIAAA ACSTGSGVGG GSGNATGSHV  720
NRARLLQILN LATKQQQQQQ QQQQLQAGAA AGRGTMTPAR YRESLQRLQS RRHQLLAQQQ  780
EITRQLLAIE EEEAALKAGM EEAAMAELGA AGAGLGLLGG GLGLGLGMGV AGGRPGLGVD  840
EDGEGGGGSG EAAEPAEGEE EQLGRGGAGV GAGVLPSWAA AAAAQLHLHA ALGTPQRSAA  900
PQRPPAAATA LAPHSQPKPQ SQARPQSQPR PQHRPQQAAR QQAAEPPLAS VPAGPLAPRQ  960
QQQPPADLVP PGLAAWPNSR LLVADGGVAE DCGAQTAAGM DTGTPGTEVP GAAAEAEAEA  1020
EAEMAAGLAL RQGGAAAAQA LADMKAEGPA GDAPAGPAGP LGADGAAAGG GGVLSLDAHR  1080
GSSGSSGSGA AAGALRPLLQ SPSRLQLELE LGGALRQQGQ LKQEHGQEQP QQQQPHLQQP  1140
PPPPPPQQQQ QQQQQQQQQQ QQQQQHVQQP VLEAGASERR VRPRLGPEGG SEAARQQARP  1200
PGRGGDLDPP PPAAAGNVEA LLGSAAEPPA ASLIRLQQLQ QLQQLAALQA LHPNQQPGLA  1260
AAAGAAAAAA AAAAAGVESG DATAEQQPQL LAQQSQLQQL HLLQHIAAQQ QQQQQQQQQH  1320
QANSFRPQPQ LQLQPSQSLP LHSAGGGGAD GGAAEQMVSL LQRQLLLQQL QQQQQQQQAG  1380
LGVSPAQYRS EADAAMLAGR RADLGGGGSQ PLPAGVAACE GGGAAAGGGG PGLRSLPVDL  1440
SLLPPLMQHQ LLLGLRLGRA ESVGSGGGGA GMAGPGAGVG GGMQGLGLLG ALGPHELGGG  1500
LEDGGGAGGG GVLAALLPPR PSIGAGAGGV GGGDGKKLPA KRGRPKGSAN NTSSVFDVDY  1560
SLTPAQARLA EAAAAAAAAA ALTSGTGAGA LTNGTGAAGT ATMVRGGSTA TGIGASGTVE  1620
VSGKRGALKP QPQQQMTVAG PAAVAAAAPS QPAQPRSQPS QPQTQSQPQP PQTQQQQVQT  1680
PRPPQPQTSQ PQSGRGRKRS SSGRGAGGSG GSGGGGGGGS GGGEDDSDDD DDEDDDGFDG  1740
PDDEGEGLGG GGGGGSGATG RGLPADITLA DLRKYFELPN QEAAKRLGVS GTHLKRKCRQ  1800
LGVLRWPQRK LMSLRALAAS IQSDARLNEE SRQALLAQVA RNHQSIMDDP NAPLAAGLKV  1860
TRQVQYKQTF DRRTKGSGPG CGGGGGGGGG GGGGESGSGG Y*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	524	533	RGRGRGRGRG
2	524	534	RGRGRGRGRGR
3	1708	1719	SGGSGGGGGGGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre06.g297150.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DQN8	0.0	A0A2K3DQN8_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cre06.g297150.t1.1