PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g293750.t2.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C3H
Protein Properties Length: 573aa    MW: 58425.7 Da    PI: 7.996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g293750.t2.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.44e-0692111626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C +f + G C++Gd+Ck++H+
  Cre06.g293750.t2.1  92 CFDFTK-GVCSRGDKCKYSHD 111
                         667888.*************7 PP
2zf-CCCH201.2e-06171192426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C +f + G C++G+ C+++H+
  Cre06.g293750.t2.1 171 AICYDFVK-GVCQRGAECRYSHD 192
                         58******.*************7 PP
3zf-CCCH23.41.1e-07211232426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C +++r G C++G++Ck++H 
  Cre06.g293750.t2.1 211 EVCYDYLR-GRCNRGATCKYSHN 232
                         78******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-586112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.53586113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-587111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-587111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103120147IPR000571Zinc finger, CCCH-type
SMARTSM003560.28121146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436167194IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4168193IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4171192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558207234IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5208232IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5211232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4211233IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MDQYQLAQLQ QRFQEVNLSG GVDQGAMLKS AGDLLSSAEA TTQYSSSESS SGADNLNQLD  60
SSSLLDTGML ATARQSDGAR STGQPEGKAQ ICFDFTKGVC SRGDKCKYSH DLATIVHFNS  120
KEKGICFDYL RNQCHRGLLC RFSHDLSNIA QQCQVNNGVA RGPAQGAKPN AICYDFVKGV  180
CQRGAECRYS HDLSLIARMA RGGSAQPKAG EVCYDYLRGR CNRGATCKYS HNIAFLAAPG  240
FLGNAMSSDG VPMAAQAPGG HMSAGGAPPL GPMPVPGGPG FMGMGGMSGM GPRPLHTALS  300
ADQATLSHVL AAAGPGAVSQ MLAAQAAAQQ SNGLAAEAAD GRRRSNSLNG DMGNDTLAVN  360
DQPHWNAKGL AMAQHAAIMQ RMAGMAAAAG MQQAFGGGMG QGMPGRGMPP GADAMSHLYG  420
KPPPSMGSYG GHDTSAGMRR PPLPPGGGSV PAEFAALLAA GGMADSHALY AETIKAQLQA  480
QQGARMVPNL SGGGAPPMMA AAPQPIPGRD SQGYDVAAAQ YAQQGGSQSG GGAPSSDSGS  540
LSRSAPSAGA PVNPDLLPMI KEIWSKPGQI AA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.167990.0normal conditions| nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g293750.t2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001701566.10.0hypothetical zinc finger protein
TrEMBLA0A2K3DQG00.0A0A2K3DQG0_CHLRE; Uncharacterized protein
STRINGEDO973240.0(Chlamydomonas reinhardtii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.13e-07C3H family protein