PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g289900.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 862aa    MW: 86201 Da    PI: 9.2341
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g289900.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.6e-1287131147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r  W+  E+  lv a++ +G+  W++Ia++++ gR+++++k+ w++ 
  Cre06.g289900.t1.1  87 RPDWSRTEEVTLVSAHATYGNQ-WAAIAARLP-GRSANEVKNIWHST 131
                         678*****************99.*********.*********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.43E-1282138IPR009057Homeodomain-like
PROSITE profilePS5129419.01582136IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-1586134IPR009057Homeodomain-like
SMARTSM007172.1E-1186134IPR001005SANT/Myb domain
PfamPF002492.8E-1187130IPR001005SANT/Myb domain
CDDcd001672.32E-890132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MSETQQAAAS QDDGDGSSDR TSGDESASEG EGEEGDTETS ASLDEEEESS EEDSEDDFTP  60
STGKRRKAGG SSSGGKESRS TRVRRKRPDW SRTEEVTLVS AHATYGNQWA AIAARLPGRS  120
ANEVKNIWHS TLRSKSLRGR ALLHAYAKAV EATVMDPTAR RAALDAALKE YGGGGAAAAA  180
AAAMAAMAEA AKTAAAPGGG RGLLNLGADL RSRSAGVGEG GTTPVLSIKG EADGSGRPQQ  240
GGGALRQQSA AQQRTGSHGT AGAAGGPADG GARSQGAGGQ PHGGGGGSAS PHTNKTHVAK  300
RPAAAGGQDG GGSAAAGGGG AAAVAGAAKR QRRRPQDAPS PGGAAAAAPP KGVSTKDAVS  360
GAGGGGGGGT PSASAAATGE RIHRASSFQQ PPPPNDGALA DGGTAATAGP GLVYLLHSGQ  420
QQGQQQQGQR VIYVRQPPHA LPHRIGTGAA PAQGAGGGGD ETIRPEGAPA AARPLHWSGH  480
VHGQGGSGGS GASVNAAAGT GPVSNSPSPP APPLGGTADG SRLLQHAGGT AASMMSAAGT  540
LAGVLGGGTV PPSAATVAAA VAAAQHQHHP HHPHQHQHHQ HRHQQAHSHA QQQQQQHQQQ  600
QRLLLEEHSK DYAWAQEQIR RRQALQEMEE QLELLQQRQA ALSSERSGAG GGGGAPPPRP  660
PRPQAHHPPP PRPSDLLLLP PAQGSNRSVA AAVTRGGGGG IGAADNPAWP LLALPAPPPP  720
PQQQQQQHYR HHQPAQLMQQ EPRFSQLLQR LGQQQHQHQQ APPQQQQQQL PNLFNRERRE  780
ALPLTDVASV MGLGALASDS ELAWCLSGLM GEAAGTGRSQ GLLGGLGGGL RGLGGLDGFG  840
GAGGGGGAGG GFGSYGGSGD M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16486RRKAGGSSSGGKESRSTRVRRKR
2359369SGAGGGGGGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g289900.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DQ760.0A0A2K3DQ76_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP776526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-12myb domain protein 14