PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre06.g275550.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 1108aa MW: 109007 Da PI: 5.32

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre06.g275550.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.3	1.1e-16	942	987	4	49
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 ++s +dl++y++l+ ++AAk Lg+ l+ K+ CR++G++RWP Rk+ Cre06.g275550.t1.1 942 KVSRDDLKQYYHLQAREAAKLLGMALSCFKKVCRRLGVPRWPARKL 987 67899****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.722	919	1010	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-16	943	987	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence Send to blast
MACERPDIKQ LGVAEPGVLG VASPVQTRSV APSALPTGAG TSPGGAPTGA VPGSHLSSTT 60 SSEPDEMGYH CSSSPSPPQS SEPGQAANAP GKPGPASSPV CPPAANVASQ TEPLPTLPSQ 120 PQRPIPDQIS PEAAASLPAA AAASAAATAA ATAAATAAVA ASGNPETAPK QLSAGSGAVG 180 PTPAPHAFAS TAMDGARTGD ASGSGLRPPR EGPKAAESHM GRQSSQSLPA APQPTGGLLA 240 TIELMRQQQV AAAAAVAAAA GATVAKGSPI EGGKNMMDAA DADVGHGFGE VETCQLTKKE 300 LAIGLHLVLG EGMSEFVSMG VQPVLFAEYL EQIKTACWAM WGGPGLPPAN MVRQRMHVAL 360 TSPLAARLLE LDVNNALAAK GVRVGPGGGL MHLSPLPLQV PGLLPMQVPG LGGVDAAVML 420 GSPSGSHGVA AAMAAAAAAA AAAGRSWPGA PPGVVGMLPP MQHFGSLAAA QAGLAQMGAG 480 MIDPAVLAAA AAAQQQQHGA AELEQILLRQ QQLQQQKQES HDEAQQQQHL QQQKQQAVAA 540 HDEPAPKRKA SGGRGARGRG GSGGSGSGSA AAASATAAAD AVMVQEAVGD VTLERDADAA 600 PPGRWPSRGS GRQQGDAHAR SSAAGAEVAG PAGKSGAVAG AAAASLSRLE ALMAATEHVA 660 GLGGDEEGAQ EASVGGAAAH GEAAAAREAA PVPMEEGAGA GADEPLECEE DIFNAAAAAA 720 AAAAGAATAT VGAKRRRTAG GGSADLGPAG LLALDRTALL LQAAGAAADA DPELRAAGLG 780 SVGGAAGAAA GTGVMGRGDL DGGDSDDDGG VGGEDGEDDG GDPWLGPPVA RSSKARRALA 840 GRGASGISTG GAGGAAAAHL LLGGALGALV GVGRDGRVLP DGAYTAAAAL RRGGGGGDDD 900 MAMGDGDEEG DYMMGGGGSG GMSGGRGRSP AVGGGRGWPS GKVSRDDLKQ YYHLQAREAA 960 KLLGMALSCF KKVCRRLGVP RWPARKLVCL HRMATTLRSM TNMSPQEKQE AMRRVKQNID 1020 DILEDPECAV YEDIRKLLHG QYKMRTNQRQ VRGKSGRSSG AARRRNSGGV GGSVSGDGEE 1080 WDEEGDDDDM MGVMGAAGVD MGAAGME*

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence Send to blast

MACERPDIKQ LGVAEPGVLG VASPVQTRSV APSALPTGAG TSPGGAPTGA VPGSHLSSTT  60
SSEPDEMGYH CSSSPSPPQS SEPGQAANAP GKPGPASSPV CPPAANVASQ TEPLPTLPSQ  120
PQRPIPDQIS PEAAASLPAA AAASAAATAA ATAAATAAVA ASGNPETAPK QLSAGSGAVG  180
PTPAPHAFAS TAMDGARTGD ASGSGLRPPR EGPKAAESHM GRQSSQSLPA APQPTGGLLA  240
TIELMRQQQV AAAAAVAAAA GATVAKGSPI EGGKNMMDAA DADVGHGFGE VETCQLTKKE  300
LAIGLHLVLG EGMSEFVSMG VQPVLFAEYL EQIKTACWAM WGGPGLPPAN MVRQRMHVAL  360
TSPLAARLLE LDVNNALAAK GVRVGPGGGL MHLSPLPLQV PGLLPMQVPG LGGVDAAVML  420
GSPSGSHGVA AAMAAAAAAA AAAGRSWPGA PPGVVGMLPP MQHFGSLAAA QAGLAQMGAG  480
MIDPAVLAAA AAAQQQQHGA AELEQILLRQ QQLQQQKQES HDEAQQQQHL QQQKQQAVAA  540
HDEPAPKRKA SGGRGARGRG GSGGSGSGSA AAASATAAAD AVMVQEAVGD VTLERDADAA  600
PPGRWPSRGS GRQQGDAHAR SSAAGAEVAG PAGKSGAVAG AAAASLSRLE ALMAATEHVA  660
GLGGDEEGAQ EASVGGAAAH GEAAAAREAA PVPMEEGAGA GADEPLECEE DIFNAAAAAA  720
AAAAGAATAT VGAKRRRTAG GGSADLGPAG LLALDRTALL LQAAGAAADA DPELRAAGLG  780
SVGGAAGAAA GTGVMGRGDL DGGDSDDDGG VGGEDGEDDG GDPWLGPPVA RSSKARRALA  840
GRGASGISTG GAGGAAAAHL LLGGALGALV GVGRDGRVLP DGAYTAAAAL RRGGGGGDDD  900
MAMGDGDEEG DYMMGGGGSG GMSGGRGRSP AVGGGRGWPS GKVSRDDLKQ YYHLQAREAA  960
KLLGMALSCF KKVCRRLGVP RWPARKLVCL HRMATTLRSM TNMSPQEKQE AMRRVKQNID  1020
DILEDPECAV YEDIRKLLHG QYKMRTNQRQ VRGKSGRSSG AARRRNSGGV GGSVSGDGEE  1080
WDEEGDDDDM MGVMGAAGVD MGAAGME*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre06.g275550.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DNM7	0.0	A0A2K3DNM7_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6094	2	8
Representative plant	OGRP10333	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cre06.g275550.t1.1