PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g275500.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family ERF
Protein Properties Length: 601aa    MW: 60544.9 Da    PI: 4.4371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g275500.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-1895144255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         g +GVr ++ +g W+AeIrd +    + kr +lg+f taeeAa+a++ a+++++g
  Cre06.g275500.t1.2  95 GLRGVRKRP-WGMWAAEIRDRT----SgKRRWLGTFNTAEEAARAYDTAARAIHG 144
                         679******.**********42....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.74695152IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2095152IPR016177DNA-binding domain
PRINTSPR003672.2E-896107IPR001471AP2/ERF domain
PfamPF008471.3E-1096144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2797153IPR001471AP2/ERF domain
SMARTSM003802.9E-2897158IPR001471AP2/ERF domain
CDDcd000186.70E-2497152No hitNo description
PRINTSPR003672.2E-8118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MQVDVSYADS PTSGDTGPLA YWNGEYAPQQ GLPFGGPALT PFTSNTAMHA VAFVPALPAD  60
HYTMKASTGS PISPSSAAAR IRNSASCRLS RQAAGLRGVR KRPWGMWAAE IRDRTSGKRR  120
WLGTFNTAEE AARAYDTAAR AIHGPAAKCN FPEGEWGEEE DEEERRMAVA HNRTGAGRPR  180
GGRTRAGRTP RARQTYDDTD DWEDEAADEA AAAARAAAAA ARRRAAKAAA AANAAAATAA  240
AAAAAANASR AARLQAQQQR LQQQQQLALG GEVGDSFEDW EMGFMDAHMM GGVGAVGGMG  300
MGDVGASAAG GTSDDLDVDV DYDDGGIMGG AGGLHDGGGS GGADSYDSDQ YIGPYGGGDG  360
GAAAAPGMQQ LHMQMHMQVQ LAADSCRAAA QSARCSATAQ LALQLAAQGV DTSSLCLGGA  420
GVGIDAGADG SGLEGSGSGL EGGEHHGGAD GGVDGALSLL GSGISGFNGL AAGGDELALC  480
VADAWPGEAD SLAPGQQPEL EPAAGAETHL QLQLHLKQEH EEQGLHALAT GHAALGPQAA  540
AGAGLLRDGD YLAGAGDAFP SFHAFSGGYG GDAWDAFNGA GGLEDLHQLG NLDHDPAADM  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17961521572Ethylene-responsive transcription factor ERF096
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.133141e-104normal conditions
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g275500.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DNL30.0A0A2K3DNL3_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-13ERF family protein