PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre06.g266950.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | GATA | ||||||||
Protein Properties | Length: 1596aa MW: 165198 Da PI: 6.653 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.9 | 3.2e-14 | 922 | 955 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkg 34 CsnCgtt+TplWR++ g++ +CnaCG+y + ++ Cre06.g266950.t1.1 922 CSNCGTTQTPLWRKDReTGQT-VCNACGIYKQTHN 955 ****************55555.********99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 18.834 | 916 | 976 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.4E-11 | 916 | 967 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-12 | 917 | 962 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-17 | 919 | 967 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.64E-16 | 922 | 967 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 922 | 947 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-11 | 922 | 955 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1596 aa Download sequence Send to blast |
MRGEEHGGDT SHPLPVLDAA SAGRLYGHDD NGRAHQPGGL GQLHVNHLAG LKRSIWEACA 60 VGLQAQELQA RSEAAKLSPL GPQDVPAPPN QSSQHQLLLQ RLVSALGGGH NAVAAATTSS 120 GIGNSSGYSS GLPLQALQLL VRQQAEQREV VGAGEVEGGE AAADQERTAK RMRLQLFEKI 180 LLAQEQQQGR QQLLSTLQVK QEHQQEHEHT LLQQLRQHQQ QHQEDRRPAA GPPLQLQLLQ 240 RHLMQLGPSA SRAAQQQQQS GSGVGERAGT SESSLSGSMA TGAVLRFKSE AEVEQQLATA 300 AAPMAAAVKA ELMLEPGHLG IGRGSETGTG TGAGTAPAYD SQAEGAAESG RKPQCGQQPC 360 MGTSPAAAQR EAQPQDAQPP LDEGQREQQQ PRPSLQLRGI QAATKSQPAT SAAAIIETSS 420 RSPAGSDVTP VATPQAQMVD GAVVSPEEAV AGMQMDAGSP AAAAAPEAEE QVTSAADDTA 480 AVAAFLLHLR EAAVPESGSG GDDGEDGMEL AAPEVDEAPL PEVDILPLEA PQEGMVDAGD 540 GVFVCPTTAG PGITFWPLWK PDPNGDQELF PRVARGLRTR PNRPAGPISS GHYAKLREAV 600 APDPRTPRVP RRALLGGLHP AALAQLLAAQ QLQLQLQDQH QHQAEAQQLQ LLQLQQQQMA 660 ALGQQQQEQL LQLYQQQPQQ PQLQPQPRFL VQRGANGQPV LVPLTGAALP AHLASGRAGA 720 AGGGINPQAA AALLARLTGA EPPSAGSPAP AAALVAAALA GDASALLLLS QQLETGGARG 780 SGGASGGFLP RSVSAVTNVG ADDEDPGHKH DHLPAFASDG HHHHARPHPH PRQHAAGGPI 840 RGLHHQHQQQ YQQLLLQPRQ QLHLDAARHH PYGAQAPTGG GGAGMQQAQA GLPLSLPGVV 900 GAEWVPPPPP RPPRNHRGPL LCSNCGTTQT PLWRKDRETG QTVCNACGIY KQTHNTDRPV 960 DGRSEERPQQ AAQPARSQLP PPLQQQHPQL LERGAAAVVL PANAGGQRQL AAALELSNRW 1020 AHERSTAAAT AAVTADVGRS PRWSAPQSPL NEAASEAALE GGLGVAGGER AAVQPLQLQL 1080 HLGPLSRELS LQTLPLGPLH SDADLDPARL LGGAPLAAAT EASSASPELA NGQRMLDLNL 1140 SPEAQLVGSD RIAAACASGG RAVVHVQGSR AASPLRLDEA AATAVAGAEG GADRGQRPVS 1200 PLRLSALAGG DSVASGAAGA GGGGATAARL GDEGVGAGAG GIASSVLLQH LVQKVRSGQE 1260 HTVLAPRQQR HQQHQQHQQN QQNQQHQQQN QQQGAAPATS TAVLLRQLLS ALHRAQAGGA 1320 ADGQDSGQSD AAAQQREREP AALRDLNGGA GGAAGPVKLG ALDVAGEGVV GRGADRPGEG 1380 HEDARLKILQ ALQLHRQQQD AEQGHRQASV CVEQQQQQQQ QQQQQPVLHR LVGSGAGAAV 1440 PHISIDLTDD ADDYDAAPPR HVPLLPLPRS AQQLSHLPLH PRQPHSHPPS QPLQRDLGGL 1500 PLTQPPAAGG AGVGAGRAGH GVRLQQLQLQ GHGVGNGSSW LEDGGELGGR DGYGCSGGRD 1560 RPHPVMQLHP VAVGVGGGGK ATPGQLQAAG RWLQL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre06.g266950.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001696259.1 | 0.0 | predicted protein | ||||
TrEMBL | A0A2K3DN21 | 0.0 | A0A2K3DN21_CHLRE; Uncharacterized protein | ||||
STRING | EDP08236 | 0.0 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4830 | 8 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Cre06.g266950.t1.1 |