PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre06.g264400.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 3030aa MW: 298093 Da PI: 6.7362

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre06.g264400.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.9e-09	2198	2241	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eE + +++++k +G + W++ a+ ++ +++ q+k ++++y+ Cre06.g264400.t1.1 2198 YWSQEEKDVFLHVFKSYGRD-WARLAEAIP-TKSTSQIKTFYHNYK 2241 5***************77.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-11	1594	1649	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.84	1599	1650	IPR017884	SANT domain
SMART	SM00717	4.5E-5	1600	1648	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	8.382	1858	1906	IPR017884	SANT domain
SMART	SM00717	18	1859	1904	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	11.203	2194	2245	IPR017884	SANT domain
SMART	SM00717	1.4E-9	2195	2243	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.35E-10	2196	2245	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-8	2198	2241	IPR001005	SANT/Myb domain
CDD	cd00167	4.88E-7	2199	2241	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.6E-7	2199	2241	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 3030 aa Download sequence Send to blast
MDRGPPRAGP GGHRPPYDGP TSPREFYGGP PRDGRDFRRP SFSQDRGFAS PVGRAGNFNG 60 PVSPDRHRGY SPERGRPYSP PDHDRRGFSP ERNVDRDRGP RFQMQERPNG YRGERPRDEG 120 FRRDNYGYRG GGGGAGGGID EQGRPPVRSR DPSPDHHHSH YHSTRDQPIR ERGHEVDQHG 180 PRPTSREGTP LDNWGKSGAG TGGLSSHGSH GMGGSRGGGH RTNTAAVSLG PAAGGGGGGG 240 GAGSSRQGAP SGPLSVAAPS GDFADTGPSS NGDLEAGEVL PGPTPGSRGG EQHTRPSPEH 300 HNSGHHHSSH HNSHGHHHHH HHHHSSSYHS HGSHQSGGPG GGGAGGGAGP GPGSTSHHHS 360 HHGHRSSSGP PGGGTRGGSS GSWEAKGAGG GGAGANQRDG PPLREASSRD VRGSEHGGRD 420 SRDGGGREAG RDAGGSSGRE AREGSRPPQR TPSLTGAGGQ QQPTLRDGSG PGRPELVTRE 480 GSVPVRDHRD RDRDRDRERE REHSAGKGRE PGRSSSQGGG GGPPSPGQVG REGRGPADGS 540 EPRWSSGGGG LHHAEQRRVS SGAVPGLEAA DRRPSNTGAE LDRRGSAHLA SLDRRASGSS 600 SLGQQPSASE AQQPRVSAGG GGDAPGPNDG GAGGGGGGGA AGPAAGVDDH DCEPGQVLLP 660 PPQAQPTSGS GLDRRPSGMT GGSTGAAAGA GTGAGLHAVG SVNSLSAAPG AAAASVEPEP 720 GEVMSDGEVE PEQEAAERAD SGQLDPGQIP PNELESGAPT DPPPPAAEAS NAAVARAATA 780 AAPAVEKAGA PADPFAGPAA GATAAAAAGG GGADAVAAGS REEDAAVPSA SGAAAVSSDM 840 ERAASGGAGG LSERQPSLTG GGGGGGGPER APSLSAGLGG AGGGGGGEEG MGTERKSSLS 900 IRRFGFGRAR RSLPAKSAGE GIPEEGEAAG LDRAPSASAP RVSQPGDAPE AGEAGSAAPG 960 ATAGGDAVAA SGAASGEPAG LGTGGARDLL SSLPPILTIP TPAGALPSAA PTPGTALTPG 1020 TALFSNATTP MPGTTPASTI TPYHGSAGGP SMASTPGSAL TGSGPVGATP AGGAAGPVVA 1080 GASTAVPMEV EGGQQQQQQQ PSAAQQDVNN AAAAAQQGQQ PQPQGETGGN SAETVAGLSA 1140 RIETLETDIT DLERQLSELM AEVNQNRSEA SALEAALGSL QEQLLEDSSD EDADDDDISV 1200 SDHSSDLDGL DLDDGVGVGT AAGAGGQQHT AAAASTSDAA EAGQAAAAVI AAAAAAAAAA 1260 AAAALAASGR RTSPAPGMEA GFSGALAKEE GEAAAAAARA QDAEDDAAAA AASAPSNKPR 1320 GRPRSTAKMR AAEAAAAAAA AADSRRKQTE QVTRVPADGM LHLPAVHFKP RTLAAAISTV 1380 RQGHEEVLRM LPDDLAARVR DAIAAAAAKQ CRAAAAAPCP GYGRWAVQVP LVEVIVEPMY 1440 REPTDLPAYH ANQARHAAVR GAVARYLRQR RGLVAAKQEA LVAQYGTNMA AYKQYVTNNG 1500 RRPMLPIPMP TGRGHGLYGS RAAAATQPAY NPYAYSHSDV VRSDLDEQRL LNNFAAVETL 1560 KHISAVPDMV LDSWERRWRA YDNRCGLVLD PLRELEEERV LKAWAEEERT LFMDKFLAHP 1620 KDFRKIATFL PGRSPGDCVA FFYKNQKLDD FSTVRRKQQL KKRRLQADMR KQQYAPLLVA 1680 PIVAHRQRAA AQQAAGGPGG AAGVGPSGPG AGGGMGPGAD GRGGGRGGRG GARSMAAGSG 1740 MHHRRPSGQD PLEGYGPGAG PLPVPGSGPQ SMAHAVSAPL PVSAGRGPSG LPPGAAAVMA 1800 APGGYQTVMA AAAVHRGNGS DGRLDALGGS PPTGPPLLPP IGGSMTVQAP SPPHHGGGSS 1860 SGWTEDDFIE CYRTHGKNWE AYCRVLGMRS ESAAKQYYYR NRERLGLMEP PPQAAAPQRV 1920 PLLPSADVAA AAAAAAVAAA AAAGRGGREG ASEGASPQFD ELGLGGLQQP VLLPVKGASM 1980 RGRRGPTRTP TAGGGSLNNG PPLHSGAGSL ESSEALGRHY STKGDLDPEM RSDSEYDPAA 2040 AGAAAAAAAA AAGAAAGGDA ASAVDLLAAL RNPDSSALTQ LLAGGLLTAP PGKGAGGDQL 2100 GSMLGQLLLQ QEQRLEARER EQQQPSGGLG LNLNVLLPGG GNAAGGGSGL HLFTAGGSPA 2160 PMDEQLHGGA LPSPMDDLGG GGGGAGGLGG SGRRGANYWS QEEKDVFLHV FKSYGRDWAR 2220 LAEAIPTKST SQIKTFYHNY KTKMGLDKLE PPVGGPPTGR GRGGAAAAVR AGRESAAAAA 2280 ALGLRGVDLG DAGGGGGGGF GDADERPAKR QALTPTQELL AALTGAGGSG GADLSALTGG 2340 GGVDGGGGLS QLLDLQLLAG AFNGQGGSGG GGNGSSAASP ASILQLLSSL SELQGGPPSA 2400 GRDPGGDGGD GGLRLGPGAG GSASSTRGPS PGPGGNGGGS QALQALNLVS SRQGDGGLQG 2460 LALPSGIGLQ GVPLTGPGGL VSLFGGGGGG GGGNASGGSA TPLKLQALNM DLGTLAGLLG 2520 GSLDREAGAH GNGGGGDGGL GALAAHLQLQ HAFAGLDRER HAAAGGGGGG ALGGGLGGLG 2580 GIGGGGDSAA QVRELQAQLQ QRERERERER ELREMREFRE LERELREQQA EAEAAAAGAM 2640 SVTAAGLLEV FTSHMAQQRR QGQHPHPQQP EPLQHESSAA ANAAGGGGGG GGGTSTRAAL 2700 EALAAATAAA AAEAPDHRFA QATGEFGAAA AAAAANAGSG GPSAAALLAA LKGAMGELNG 2760 AGAGASGAAV TGVGRRSARS SHDGGLTTAE TLSHDGPGAG GGDAGDSEPA AKRQKRSSRD 2820 STQLQPLTLP GLDLGALVAA GGGGVAGGTP PAVSPRAGDV STRRLLLGPG GPSEDAVAQL 2880 LLQHQAGLRG AVPGPAGGGG GGGSGRPPIS PPLNLLGGPM AASSGLRLVP LAPSQAVGGG 2940 GPGRDEGLTR MRLSTPPLPL AVPGGGAGGS SSQALAEIIS SLKGGGALGG GGGSGGIERL 3000 LQADGPAGGL QPARGANGSG SGWQQTDME*

Sequence ? help Back to Top

Protein Sequence Length: 3030 aa Download sequence Send to blast

MDRGPPRAGP GGHRPPYDGP TSPREFYGGP PRDGRDFRRP SFSQDRGFAS PVGRAGNFNG  60
PVSPDRHRGY SPERGRPYSP PDHDRRGFSP ERNVDRDRGP RFQMQERPNG YRGERPRDEG  120
FRRDNYGYRG GGGGAGGGID EQGRPPVRSR DPSPDHHHSH YHSTRDQPIR ERGHEVDQHG  180
PRPTSREGTP LDNWGKSGAG TGGLSSHGSH GMGGSRGGGH RTNTAAVSLG PAAGGGGGGG  240
GAGSSRQGAP SGPLSVAAPS GDFADTGPSS NGDLEAGEVL PGPTPGSRGG EQHTRPSPEH  300
HNSGHHHSSH HNSHGHHHHH HHHHSSSYHS HGSHQSGGPG GGGAGGGAGP GPGSTSHHHS  360
HHGHRSSSGP PGGGTRGGSS GSWEAKGAGG GGAGANQRDG PPLREASSRD VRGSEHGGRD  420
SRDGGGREAG RDAGGSSGRE AREGSRPPQR TPSLTGAGGQ QQPTLRDGSG PGRPELVTRE  480
GSVPVRDHRD RDRDRDRERE REHSAGKGRE PGRSSSQGGG GGPPSPGQVG REGRGPADGS  540
EPRWSSGGGG LHHAEQRRVS SGAVPGLEAA DRRPSNTGAE LDRRGSAHLA SLDRRASGSS  600
SLGQQPSASE AQQPRVSAGG GGDAPGPNDG GAGGGGGGGA AGPAAGVDDH DCEPGQVLLP  660
PPQAQPTSGS GLDRRPSGMT GGSTGAAAGA GTGAGLHAVG SVNSLSAAPG AAAASVEPEP  720
GEVMSDGEVE PEQEAAERAD SGQLDPGQIP PNELESGAPT DPPPPAAEAS NAAVARAATA  780
AAPAVEKAGA PADPFAGPAA GATAAAAAGG GGADAVAAGS REEDAAVPSA SGAAAVSSDM  840
ERAASGGAGG LSERQPSLTG GGGGGGGPER APSLSAGLGG AGGGGGGEEG MGTERKSSLS  900
IRRFGFGRAR RSLPAKSAGE GIPEEGEAAG LDRAPSASAP RVSQPGDAPE AGEAGSAAPG  960
ATAGGDAVAA SGAASGEPAG LGTGGARDLL SSLPPILTIP TPAGALPSAA PTPGTALTPG  1020
TALFSNATTP MPGTTPASTI TPYHGSAGGP SMASTPGSAL TGSGPVGATP AGGAAGPVVA  1080
GASTAVPMEV EGGQQQQQQQ PSAAQQDVNN AAAAAQQGQQ PQPQGETGGN SAETVAGLSA  1140
RIETLETDIT DLERQLSELM AEVNQNRSEA SALEAALGSL QEQLLEDSSD EDADDDDISV  1200
SDHSSDLDGL DLDDGVGVGT AAGAGGQQHT AAAASTSDAA EAGQAAAAVI AAAAAAAAAA  1260
AAAALAASGR RTSPAPGMEA GFSGALAKEE GEAAAAAARA QDAEDDAAAA AASAPSNKPR  1320
GRPRSTAKMR AAEAAAAAAA AADSRRKQTE QVTRVPADGM LHLPAVHFKP RTLAAAISTV  1380
RQGHEEVLRM LPDDLAARVR DAIAAAAAKQ CRAAAAAPCP GYGRWAVQVP LVEVIVEPMY  1440
REPTDLPAYH ANQARHAAVR GAVARYLRQR RGLVAAKQEA LVAQYGTNMA AYKQYVTNNG  1500
RRPMLPIPMP TGRGHGLYGS RAAAATQPAY NPYAYSHSDV VRSDLDEQRL LNNFAAVETL  1560
KHISAVPDMV LDSWERRWRA YDNRCGLVLD PLRELEEERV LKAWAEEERT LFMDKFLAHP  1620
KDFRKIATFL PGRSPGDCVA FFYKNQKLDD FSTVRRKQQL KKRRLQADMR KQQYAPLLVA  1680
PIVAHRQRAA AQQAAGGPGG AAGVGPSGPG AGGGMGPGAD GRGGGRGGRG GARSMAAGSG  1740
MHHRRPSGQD PLEGYGPGAG PLPVPGSGPQ SMAHAVSAPL PVSAGRGPSG LPPGAAAVMA  1800
APGGYQTVMA AAAVHRGNGS DGRLDALGGS PPTGPPLLPP IGGSMTVQAP SPPHHGGGSS  1860
SGWTEDDFIE CYRTHGKNWE AYCRVLGMRS ESAAKQYYYR NRERLGLMEP PPQAAAPQRV  1920
PLLPSADVAA AAAAAAVAAA AAAGRGGREG ASEGASPQFD ELGLGGLQQP VLLPVKGASM  1980
RGRRGPTRTP TAGGGSLNNG PPLHSGAGSL ESSEALGRHY STKGDLDPEM RSDSEYDPAA  2040
AGAAAAAAAA AAGAAAGGDA ASAVDLLAAL RNPDSSALTQ LLAGGLLTAP PGKGAGGDQL  2100
GSMLGQLLLQ QEQRLEARER EQQQPSGGLG LNLNVLLPGG GNAAGGGSGL HLFTAGGSPA  2160
PMDEQLHGGA LPSPMDDLGG GGGGAGGLGG SGRRGANYWS QEEKDVFLHV FKSYGRDWAR  2220
LAEAIPTKST SQIKTFYHNY KTKMGLDKLE PPVGGPPTGR GRGGAAAAVR AGRESAAAAA  2280
ALGLRGVDLG DAGGGGGGGF GDADERPAKR QALTPTQELL AALTGAGGSG GADLSALTGG  2340
GGVDGGGGLS QLLDLQLLAG AFNGQGGSGG GGNGSSAASP ASILQLLSSL SELQGGPPSA  2400
GRDPGGDGGD GGLRLGPGAG GSASSTRGPS PGPGGNGGGS QALQALNLVS SRQGDGGLQG  2460
LALPSGIGLQ GVPLTGPGGL VSLFGGGGGG GGGNASGGSA TPLKLQALNM DLGTLAGLLG  2520
GSLDREAGAH GNGGGGDGGL GALAAHLQLQ HAFAGLDRER HAAAGGGGGG ALGGGLGGLG  2580
GIGGGGDSAA QVRELQAQLQ QRERERERER ELREMREFRE LERELREQQA EAEAAAAGAM  2640
SVTAAGLLEV FTSHMAQQRR QGQHPHPQQP EPLQHESSAA ANAAGGGGGG GGGTSTRAAL  2700
EALAAATAAA AAEAPDHRFA QATGEFGAAA AAAAANAGSG GPSAAALLAA LKGAMGELNG  2760
AGAGASGAAV TGVGRRSARS SHDGGLTTAE TLSHDGPGAG GGDAGDSEPA AKRQKRSSRD  2820
STQLQPLTLP GLDLGALVAA GGGGVAGGTP PAVSPRAGDV STRRLLLGPG GPSEDAVAQL  2880
LLQHQAGLRG AVPGPAGGGG GGGSGRPPIS PPLNLLGGPM AASSGLRLVP LAPSQAVGGG  2940
GPGRDEGLTR MRLSTPPLPL AVPGGGAGGS SSQALAEIIS SLKGGGALGG GGGSGGIERL  3000
LQADGPAGGL QPARGANGSG SGWQQTDME*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	490	500	RDRDRDRERER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre06.g264400.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DMY9	0.0	A0A2K3DMY9_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2883	10	10
Representative plant	OGRP3215	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-14	MYB family protein

Link Out ? help Back to Top
Phytozome	Cre06.g264400.t1.1