PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre06.g249050.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 318aa    MW: 34491.7 Da    PI: 9.9252
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre06.g249050.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09242286246
                         SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 
                         g WT+eE+e+++   +++G g  W + a++++ +R ++qc  ++ +
  Cre06.g249050.t1.1 242 GEWTEEEHEIFIATARKHGVGdKWGLFASYIP-NRVGYQCSAYYTQ 286
                         78******************************.*******999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.307236292IPR017930Myb domain
SuperFamilySSF466891.72E-9236287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-8240288IPR009057Homeodomain-like
SMARTSM007177.0E-5240290IPR001005SANT/Myb domain
PfamPF002491.9E-7242286IPR001005SANT/Myb domain
CDDcd001671.21E-6243288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGQEGKEPGP AKRTARRLVR THQEALPAGE NVSELDRERA ERMAKNAAAL AEIGIAGAMG  60
DLRRALAPKL ESLPNANESQ PERRIARPKR ERGEVAPQRR STRVAGAVAA QLLVDGGDSA  120
DALEDGSGAK PGRGVGIMSQ EEYLASKGQS LPEGWFKSDG RFKGWVAPDV CQKLGLATSA  180
AEAWEQGGGG KFQRKISKSD VPSNLKAKGW SDARAFAASQ LRKNPNAYFY RHTAPGQPQA  240
QGEWTEEEHE IFIATARKHG VGDKWGLFAS YIPNRVGYQC SAYYTQVIIP SGRILDSRFR  300
MDAWGDAVFM GNRGKED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre06.g249050.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001696670.11e-130predicted protein
TrEMBLA0A2K3DLT00.0A0A2K3DLT0_CHLRE; Uncharacterized protein
STRINGEDP086471e-130(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP463677