PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre05.g241636.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family bHLH
Protein Properties Length: 563aa    MW: 56681.5 Da    PI: 5.6266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre05.g241636.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-11119165453
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                         ++  rE+ RR+++N++f eL +l+ +    + +K +K++iL  A++Y+++
  Cre05.g241636.t1.1 119 KKACREKARREKLNERFLELSRLVDPG---SEPKTDKSTILGDAIRYVQQ 165
                         5678**********************8...8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-14115184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.795115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-9118171No hitNo description
PfamPF000106.6E-9119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12119188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MDAVVGGQMA VVAAAGVAKL EGATTGDDQQ ALNSSFLQFL NDELVLGSEV LDHNTLEAVC  60
QVAQAPGSGG GAQSGHRPVA KRTLEDAALS DSDDDDDGGK GEKGSGKRSK GEANSAATKK  120
ACREKARREK LNERFLELSR LVDPGSEPKT DKSTILGDAI RYVQQVTVEN HQLKQLNKFL  180
EERVCTLERE RGQQLYQHSL MLTGMGGMGG MHGANGGMMQ AGQMMMAPPG AMMAGPMGGM  240
PMMAMPAAAM GGAAAMGGAA AMGGAAAMGG ASTSAGPPMA LMSAGSMSAG SIPSAPTPPP  300
VPGMTTMGPV GQQQPQQQVQ VQQAGQAQGQ MAQMQQPQQQ VQGQMVQGQM MQMQGHMQGQ  360
MQGQMQGQMQ GQMQGQMQMV PAGQAQQQAQ GQGQGQQPGG SDVSNGGPAG SAGGSGHAQQ  420
QQQLQQQPSV ALSMGVTINT GQVQSPVQVG MAGPGSAMMA AGSAAAAGQM MMPPQMMPGP  480
MMAAGGGGGG GPAGMMAMGM VGGGSSKPQA MMMAAAAANG GMAAAGGMGS MVPYQGPMAA  540
AYWLPPQMMD STQDSLLRPP AA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00372DAPTransfer from AT3G23210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre05.g241636.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DSI00.0A0A2K3DSI0_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP564977
Representative plantOGRP7551766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-11bHLH family protein