PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre04.g231124.t1.1 | ||||||||
Common Name | CHLREDRAFT_22211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | C3H | ||||||||
Protein Properties | Length: 178aa MW: 18591.1 Da PI: 9.0854 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.8 | 6.6e-12 | 38 | 62 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C ++++ G C++G+rC+FaHg+ Cre04.g231124.t1.1 38 KTKVCTRWLQ-GDCRFGARCNFAHGE 62 89********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-15 | 35 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-8 | 36 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.929 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-9 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF51045 | 4.9E-8 | 133 | 168 | IPR001202 | WW domain |
PROSITE profile | PS50020 | 12.669 | 134 | 168 | IPR001202 | WW domain |
SMART | SM00456 | 5.5E-9 | 135 | 168 | IPR001202 | WW domain |
CDD | cd00201 | 2.93E-7 | 137 | 168 | No hit | No description |
Pfam | PF00397 | 1.8E-10 | 137 | 166 | IPR001202 | WW domain |
Gene3D | G3DSA:2.20.70.10 | 2.7E-7 | 139 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDGAFPNRRG DGYGGSQGDG EGQGGKPRGF RGTAENAKTK VCTRWLQGDC RFGARCNFAH 60 GEHELRKLPE RQGGRGGGGR GYGGNAGPYG GRGGYGGGGY GGQPGMPGGY GGGQGGAPGP 120 NVSEDVWAAQ GYPVQGPNGW VQYRTRDTGE PYFHNHRTNE TVWDRPADWP VTMQGQI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 97 | GGRGGYGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre04.g231124.t1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001703693.1 | 1e-121 | RNA binding protein | ||||
TrEMBL | A8JIB8 | 1e-120 | A8JIB8_CHLRE; RNA binding protein | ||||
STRING | EDO96384 | 1e-121 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5690 | 7 | 7 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre04.g231124.t1.1 |
Entrez Gene | 5729232 |
Publications ? help Back to Top | |||
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