PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre04.g228400.t2.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family WRKY
Protein Properties Length: 639aa    MW: 67387 Da    PI: 6.9204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre04.g228400.t2.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.3e-29116173259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYG K vkgs++prsYY+C+++gC +kk vers++d++v+ + Y+g+H h+
  Cre04.g228400.t2.1 116 SDGWQWRKYGEKLVKGSPNPRSYYKCSHPGCLAKKIVERSDSDGTVLSTEYKGDHCHP 173
                         7*******************************************************97 PP
2WRKY1031.6e-32364422159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDgy+WrKYGqK+vkgs+fpr+YY+Ct+ gC+v+k+versaed++ +++tYeg+H h+
  Cre04.g228400.t2.1 364 MDDGYRWRKYGQKQVKGSPFPRAYYKCTHMGCSVRKHVERSAEDETRFVVTYEGTHSHR 422
                         59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.197110175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-27111175IPR003657WRKY domain
SuperFamilySSF1182906.41E-25114175IPR003657WRKY domain
SMARTSM007741.1E-33115174IPR003657WRKY domain
PfamPF031068.0E-23117173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-31355424IPR003657WRKY domain
SuperFamilySSF1182902.62E-28357424IPR003657WRKY domain
PROSITE profilePS5081131.594359424IPR003657WRKY domain
SMARTSM007741.4E-36364423IPR003657WRKY domain
PfamPF031061.2E-25365421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MDTSIPFPRP INARGPAPGQ TPSQLSSLPP SLQARLGLGA THDSPVLLPL LQVEASPTTG  60
IHQLCPPLFQ PAQPARVPLP IPARTEAASA APEPTRAIKR EYEPRAGNGK QSVANSDGWQ  120
WRKYGEKLVK GSPNPRSYYK CSHPGCLAKK IVERSDSDGT VLSTEYKGDH CHPAPSAVKA  180
SRFKPKPKTE PPVMVAPPVF SAVDITVPNG FPPGANGRVG FPLSGGDMLP IPEALKSDFP  240
VPHAAGAAAA HEDDTDTSEP EPAAALKAAP QDTRAAQAAA TAIRKVRDSA ESPSKRLDML  300
AAYAEEAERQ LKSSSNSPEQ GPSAKRQRTE AGAMRTRANP DDDDDGSGAP STSGMQRVVD  360
ITNMDDGYRW RKYGQKQVKG SPFPRAYYKC THMGCSVRKH VERSAEDETR FVVTYEGTHS  420
HRLPTGSRRR SARDMAEDDE DYEGEDAEED SSQPTSPQYG NVNGSGGPGQ HAASKAAAQG  480
AQLVHPSGAQ PASADFGQQL QQLSTSLLAS TVLQQAALSG VLPLLQYNSL SSEALASLGV  540
NSEALQGVEQ LNLASVGNLA DLTNLLRQHA QMDLALAAQA QAIDAANANW DPLACLITPR  600
PNVSPAGQGH AMGQAPSAGT GRQTKAAVFQ KQVATTEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27117424178Probable WRKY transcription factor 4
2lex_A5e-27117424178Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre04.g228400.t2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001692342.10.0WRKY family transcription factor
TrEMBLA0A2K3DUU00.0A0A2K3DUU0_CHLRE; Uncharacterized protein
STRINGEDP042920.0(Chlamydomonas reinhardtii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.23e-26WRKY DNA-binding protein 26