PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre04.g228400.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family WRKY
Protein Properties Length: 640aa    MW: 67515.1 Da    PI: 6.9204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre04.g228400.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.3e-29117174259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYG K vkgs++prsYY+C+++gC +kk vers++d++v+ + Y+g+H h+
  Cre04.g228400.t1.1 117 SDGWQWRKYGEKLVKGSPNPRSYYKCSHPGCLAKKIVERSDSDGTVLSTEYKGDHCHP 174
                         7*******************************************************97 PP
2WRKY1031.6e-32365423159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDgy+WrKYGqK+vkgs+fpr+YY+Ct+ gC+v+k+versaed++ +++tYeg+H h+
  Cre04.g228400.t1.1 365 MDDGYRWRKYGQKQVKGSPFPRAYYKCTHMGCSVRKHVERSAEDETRFVVTYEGTHSHR 423
                         59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.197111176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-27112176IPR003657WRKY domain
SuperFamilySSF1182906.54E-25115176IPR003657WRKY domain
SMARTSM007741.1E-33116175IPR003657WRKY domain
PfamPF031068.0E-23118174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-31356425IPR003657WRKY domain
SuperFamilySSF1182902.62E-28358425IPR003657WRKY domain
PROSITE profilePS5081131.594360425IPR003657WRKY domain
SMARTSM007741.4E-36365424IPR003657WRKY domain
PfamPF031061.2E-25366422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MDTSIPFPRP INARGPAPGQ TPSQLSSLPP SLQARLGLGA THDSPVLLPL LQQVEASPTT  60
GIHQLCPPLF QPAQPARVPL PIPARTEAAS AAPEPTRAIK REYEPRAGNG KQSVANSDGW  120
QWRKYGEKLV KGSPNPRSYY KCSHPGCLAK KIVERSDSDG TVLSTEYKGD HCHPAPSAVK  180
ASRFKPKPKT EPPVMVAPPV FSAVDITVPN GFPPGANGRV GFPLSGGDML PIPEALKSDF  240
PVPHAAGAAA AHEDDTDTSE PEPAAALKAA PQDTRAAQAA ATAIRKVRDS AESPSKRLDM  300
LAAYAEEAER QLKSSSNSPE QGPSAKRQRT EAGAMRTRAN PDDDDDGSGA PSTSGMQRVV  360
DITNMDDGYR WRKYGQKQVK GSPFPRAYYK CTHMGCSVRK HVERSAEDET RFVVTYEGTH  420
SHRLPTGSRR RSARDMAEDD EDYEGEDAEE DSSQPTSPQY GNVNGSGGPG QHAASKAAAQ  480
GAQLVHPSGA QPASADFGQQ LQQLSTSLLA STVLQQAALS GVLPLLQYNS LSSEALASLG  540
VNSEALQGVE QLNLASVGNL ADLTNLLRQH AQMDLALAAQ AQAIDAANAN WDPLACLITP  600
RPNVSPAGQG HAMGQAPSAG TGRQTKAAVF QKQVATTEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27118425178Probable WRKY transcription factor 4
2lex_A5e-27118425178Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre04.g228400.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001692342.10.0WRKY family transcription factor
TrEMBLA0A2K3DUS10.0A0A2K3DUS1_CHLRE; Uncharacterized protein
STRINGEDP042920.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.23e-26WRKY DNA-binding protein 26