PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre04.g228400.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | WRKY | ||||||||
Protein Properties | Length: 640aa MW: 67515.1 Da PI: 6.9204 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.9 | 2.3e-29 | 117 | 174 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYG K vkgs++prsYY+C+++gC +kk vers++d++v+ + Y+g+H h+ Cre04.g228400.t1.1 117 SDGWQWRKYGEKLVKGSPNPRSYYKCSHPGCLAKKIVERSDSDGTVLSTEYKGDHCHP 174 7*******************************************************97 PP | |||||||
2 | WRKY | 103 | 1.6e-32 | 365 | 423 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYGqK+vkgs+fpr+YY+Ct+ gC+v+k+versaed++ +++tYeg+H h+ Cre04.g228400.t1.1 365 MDDGYRWRKYGQKQVKGSPFPRAYYKCTHMGCSVRKHVERSAEDETRFVVTYEGTHSHR 423 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 28.197 | 111 | 176 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-27 | 112 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-25 | 115 | 176 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-33 | 116 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-23 | 118 | 174 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-31 | 356 | 425 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-28 | 358 | 425 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.594 | 360 | 425 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 365 | 424 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 366 | 422 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009846 | Biological Process | pollen germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MDTSIPFPRP INARGPAPGQ TPSQLSSLPP SLQARLGLGA THDSPVLLPL LQQVEASPTT 60 GIHQLCPPLF QPAQPARVPL PIPARTEAAS AAPEPTRAIK REYEPRAGNG KQSVANSDGW 120 QWRKYGEKLV KGSPNPRSYY KCSHPGCLAK KIVERSDSDG TVLSTEYKGD HCHPAPSAVK 180 ASRFKPKPKT EPPVMVAPPV FSAVDITVPN GFPPGANGRV GFPLSGGDML PIPEALKSDF 240 PVPHAAGAAA AHEDDTDTSE PEPAAALKAA PQDTRAAQAA ATAIRKVRDS AESPSKRLDM 300 LAAYAEEAER QLKSSSNSPE QGPSAKRQRT EAGAMRTRAN PDDDDDGSGA PSTSGMQRVV 360 DITNMDDGYR WRKYGQKQVK GSPFPRAYYK CTHMGCSVRK HVERSAEDET RFVVTYEGTH 420 SHRLPTGSRR RSARDMAEDD EDYEGEDAEE DSSQPTSPQY GNVNGSGGPG QHAASKAAAQ 480 GAQLVHPSGA QPASADFGQQ LQQLSTSLLA STVLQQAALS GVLPLLQYNS LSSEALASLG 540 VNSEALQGVE QLNLASVGNL ADLTNLLRQH AQMDLALAAQ AQAIDAANAN WDPLACLITP 600 RPNVSPAGQG HAMGQAPSAG TGRQTKAAVF QKQVATTEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-27 | 118 | 425 | 1 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-27 | 118 | 425 | 1 | 78 | Probable WRKY transcription factor 4 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre04.g228400.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001692342.1 | 0.0 | WRKY family transcription factor | ||||
TrEMBL | A0A2K3DUS1 | 0.0 | A0A2K3DUS1_CHLRE; Uncharacterized protein | ||||
STRING | EDP04292 | 0.0 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP469 | 16 | 26 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.2 | 3e-26 | WRKY DNA-binding protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Cre04.g228400.t1.1 |