PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre04.g224600.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family bHLH
Protein Properties Length: 761aa    MW: 75614.6 Da    PI: 5.847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre04.g224600.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09230283354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54 
                         ++h+ +E++RRdr+N+ +++L el P+++    ++ K  K  iL  A   ++ L
  Cre04.g224600.t1.2 230 VSHSSVEKQRRDRLNELIDQLGELAPPPPgtLDSGAKRAKHVILADAATTLRRL 283
                         68*************************988988888999999998887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-10225298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.652227283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6230283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-6230288No hitNo description
Gene3DG3DSA:4.10.280.104.8E-9231295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5233289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MADTETEEVP DLQSLLAANE ATCMGDGQAW DANWLPAADA VVHSGMQDSN TAASRLLVSP  60
VAPFQNLPTR VMSESIHGAY SVGADSSFGV PVAQAARAGS DATTLDRLPR LPSALPSPQL  120
SPPQQQQQLV QPDPASIWCG PAVASPAVGP MSAGLALNAA TLTAAAAAAA AAAAAAASVA  180
LPASVLAPTA STGTEGSNGA AGASADGMSA TAAGGRRATS GASSSAAQPV SHSSVEKQRR  240
DRLNELIDQL GELAPPPPGT LDSGAKRAKH VILADAATTL RRLHLDNQTL RTHLASASRM  300
LASAAAAVSA AAVTAPAAAP PGGGAAAAAM APTGVRASPF GMPRSGSGSD GTPVTMAMAA  360
AGGAAAAVTG VATQRAVSGQ MPPVALSAPM TYHSAPESPG PSYAASYAPG PPPALQPQPL  420
VVPPPHQQQQ QQQQQQQQPS ARTSPYTSPP ANAPAMAPPA LGAAGAAAAG TAAAPAPNWL  480
VRVVCPPHPN LVAVATAALT GAGPSGAVEL KGVRLVPQAA GSGAGAAAAQ PVVALEMTVS  540
CEAALLPGIQ QRITSSVHAL GAASNASSGS SSSCSHDLAA QQQQQQQQQQ PAVPHLPPQQ  600
QQLQQQQLQQ QQPVPMQLQM QAPMQTAMQQ QVQRHTMQMQ QMQIQQQQQQ QQQQQLMPPP  660
ALQPYRGQPQ PAVSSHAGTS TDSSTGGPVS SAAASVAAFA DVSAGSAPGG ADAVMAPAAA  720
AGATAEVDDA TAMMLATLTS NDMFDVAAME ASGDMATLRL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre04.g224600.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DUI40.0A0A2K3DUI4_CHLRE; Uncharacterized protein