PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre04.g218050.t2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | Nin-like | ||||||||
Protein Properties | Length: 1840aa MW: 178771 Da PI: 7.1684 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 61.7 | 1.3e-19 | 136 | 184 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + l++l++ ++lp k+AA++Lgv+l+ LKr CR +++ RWPhRk++sl Cre04.g218050.t2.1 136 ALPLSELQQVYHLPSKEAARQLGVSLSRLKRSCRAHNVLRWPHRKLASL 184 57799*****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.893 | 119 | 204 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.1E-19 | 137 | 184 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 1840 aa Download sequence Send to blast |
MQRIGPGSWQ SQPSHDAPLG RDYPLHGFSL PPDEGPHRPG PGAGHFHHPH QHHGHGTDSH 60 LGVRHAPLKA AAGASGRGPS QALHAFPNAL LEYHQKQEPM SDDDDNDGDG EGAGRGSGGP 120 NSASGAGNVG DALDDALPLS ELQQVYHLPS KEAARQLGVS LSRLKRSCRA HNVLRWPHRK 180 LASLHNLRDT IRNDRNMKPP DKERIQAQIS TELAAVIANP DHTIDTRLDE IRQAKYKLKY 240 YHKTKHIHAA ASAARRKRAS TGADGPEPSA NSAGGSGSGA GGAAGGGQGG YGAASVALTL 300 PGGGIDVTSP AASMLTGGGG GPMPSASVIT TATGVTTTEV MGSGGGPRLS YTSGAGASGL 360 GGGGLVGGGG GARLSGSGLA WPPQAPGGNG GGGGGGGGTP WQPSSGSWQQ QPQPWSGVSA 420 FSGGGGGGFG GGHGGRGGVQ GNDIVALGDT GGGNGGDGGR GGGGDPMSRA GSLTSGAPLP 480 QLPPGGRYTG GSNSSVQLPH PPPLSLGPHF GSAPSQSQSH TGALLQLPPA LPPTVQPPQH 540 SQHQQQHYPP IHSGVRPHPH SPQQPSLQQQ QQQQQYAAGG GSGSGMRLQR SLHGDASGGG 600 PASGDFGGGG GMYGGANNVL RRPSYGVSDE TPGTGSGFGF QHQAQQEQQH NHNQHMHMQN 660 QQQQHSPPAS VVYGHSGGRP HSQPHPHQDP SLQQYPEGPA SGPSSGPLSG QPWHQQPQMQ 720 QQQQQMQAPN QTQNQPSLLQ LHQQQQQQQH AAAAAAAANA AAVARHMSGD LDTAMEVERA 780 AGAGAGTAGA SGAGASTMSH GVIDTACAPV GQQGQGQEAA AAQVARHTSA SGAAPAAGGR 840 VGQWSTAPQL NRQTSAPGPR HSYGGHVSHY PDIGSSSGGA HGAGAAASPP EFLFTTAGAT 900 AGAPGSGHHP GVPGDMQPAP GGRVRMHSVD GAGFGISGGA GHFGSGAGHF GSGAGHYGSP 960 GPYGGAHPYG HSGGMGSYGM PGSGGHGPGG GGGYGSFGHG PGGGGAPAGG FGGGRERFYS 1020 VDGSSFSFPA TAPNSTGTGY PSLPASRQSA AGSSFAAGGG GGGGHSFHAG PPPALPSSAP 1080 AYGRAPYDSG VQTPGMSSVY GTALTPVAAA PPPGHGTPDA GGADLAPAPT LTTLLQPRRS 1140 DGGAGGGSGL GSLPEGSAVA HQQPHQHAHQ HHMLHPLPGC SPTGGPGGGG GGGGGGMSHA 1200 EAVRQHLLAP RDRAGSGRLT GTGSGSIGTN SGGGSAFALA GRSSIGRDGG AAGVGGGVGL 1260 SPAEIAAQLR ASAVSGGGPP AFDRRSDSGE VATATAGAEP LLLPSAGSPA TAVDGSGGGM 1320 GRRPSMGSGG GVTADDGSSA LAVAMAAAAA DVNAAASRMQ QVQQQFYSRS VTTGAPAAAP 1380 FMQRSTSSGG GAATPGATAL PAALPPGPAT GAPGLGFGMG MPPASADARG MAAAAAALGD 1440 GPSWMELGSV NSGQMPSFQP HAPPPPQRPQ PQEHPFPQQL HPGQPQAAAD DAQLRYQYQQ 1500 HQHQQHSHGS GSGGGAALPP GCHTVTTGRY GSPPDQPPAP PPTAMATAGS PPSSTAGTYP 1560 SPGGGSPDLS TTPPAGGSGA GASGGVAAMQ ADGGQPRAQA AAAAPPSRAN RQPYLDDLAA 1620 ALYDTLDDTD FGGGRRGGGG GGGRGRRGGA TLVDDGDDDT DGDYDDDQDQ PGPAGRGGRG 1680 VAAAAGGATG TAGTTPMRMG SSAELVSGSH QPQQQHQSPS PDQMQHQQLQ DGSGSDGGGA 1740 AAAAAAGGAV TVAAAGAVAA AAAAAAGGGD GGLTGGAPPG ANSGAIPAAL LLSSGTIMST 1800 GGGGGTLASL DWMLMDAQNT PPGGANGQLL PPPPSPPRQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1632 | 1640 | GGRRGGGGG |
2 | 1635 | 1643 | RGGGGGGGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre04.g218050.t2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DU19 | 0.0 | A0A2K3DU19_CHLRE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 6e-11 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cre04.g218050.t2.1 |