PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre03.g209953.t2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | AP2 | ||||||||
Protein Properties | Length: 1421aa MW: 136035 Da PI: 6.7908 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.2 | 9.7e-09 | 41 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 g++GV++++ + rW A I + +slg f+ +e+Aa+ +++a+++++g Cre03.g209953.t2.1 41 GFRGVCYNRMTRRWQAGIAAH-----GRAISLGAFDAEEDAARIYDKAALRIRG 89 79***************9994.....4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.6E-9 | 41 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-4 | 41 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.394 | 41 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-12 | 41 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-11 | 42 | 97 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.94E-11 | 42 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1421 aa Download sequence Send to blast |
MEALAALSGG HGHAPAAGVL SRRKLPSETA QQGQPPLHPL GFRGVCYNRM TRRWQAGIAA 60 HGRAISLGAF DAEEDAARIY DKAALRIRGL KATVNFPVRD YLLPDGALAL DLQVEALLLE 120 AFLSRAVPAD AATAAAVGDV VRQCLGRING ADPADLQEAA EALGPGYMRL MGLIADAAEL 180 LAASAATGVG APGGGGGAAA AGGATGGAGV VSHGSGEAGA GAGTGAGVGI TGNGDAVGAR 240 SGLGREAGGP SVSTDGSQRA DAAAAASLSA GGGVEGLRGA ASCQGPVGAG GPCVGVAPDG 300 GLRRDKPGHS PSPSAAEGAV GGTTVAARRA GPPEAAAAPD GAGAQLPPIP PIATPPYLPP 360 NFMQNMCQLL ATHTRATESD QQRQRGKDAP AAAAPPPPAV VVAVRQLEEF GFPLPLLMQG 420 ADHLASAGIV SPQHFKMLQA AVGGGAAAAG AKRKQPEDEA AEALPHKDHS GDVDGQATKR 480 RELERVGEPA PAAPAASGRT RSPSVPPAGA GLRLDPSSAV VMAAATVAAG AAGGVPLAAM 540 PTAPTEQAAV MTAIENAAAA VAAMPPVGPV PPALALAGSG LIGGGGGPPL KHIGLGRRLF 600 QAIQGQLPPG CELESLMPPK CGFVGVLYAA PPSCSASGNQ AGAGLWDGAA VRDLGLYSSD 660 RDARQAVNSA ARLLATTLAA ATGGGGSGVG AAGSAGPGAG DAGAGRGAMA PPAMRGAGAG 720 ARGGGGLASI NSASLFRSSG NSSMSAGGTG AVAPAPATAP PAGARHGGRP LEPAPSAGGL 780 STLRSGPSFS GPMRAHAAAG AVTAGGRLPA AGSLAAAGST GRRDGPLRQT PAPPPLLRSE 840 MSAGGHQGPY LVGGPDVADD GSVNLLCQIL VPQAEPLTSD DLNNVIARSL TPAALQSLLG 900 NNVTAAAAAA AVANGLSAAN RGPLLAPARP SQPNGTARPA PPFMPGPARG GAAAAPPPPG 960 MDPNPFRQQQ SLNLQEDMGS PPNPFRQHQR SGLGAGSGSG SAAARGTNWL AAPPGPAEAK 1020 EGQELTIEQQ QDLLRQAKAA AAAARVSGSG SGAAAAADVR RRTTAADEAL GRMPSLSGGV 1080 AAAVAAAADE VLYAGTAGTA FGSADAAAAG GGGGTHVDLF FSRRMIAAAS GCVSGGGAGG 1140 SGAVRRTSGS GGAAAGSGAG ASPPPPPLAP KQEASGEGLP LGPCIPAGAA ARGGAGAALP 1200 LGPPPPPLQP PGDLDMDDAA EPPAPESATV SKGRSEAASP PLPEVAAAPD SAAAAAAAAA 1260 VIGSGSASFV KGGAEPSPDT EMADAPADAP AAAQAWNRGG SRDGANTSNS AATARAQSSG 1320 LPDASACLTG DADVTQNAPS RATGAAEGNA PSANGLSRSA DRSGDCSAGG GGDGDGSAAP 1380 RLQRAVSREF AAVANLVGVG LQEALAKLAK TGHQESPPSK * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre03.g209953.t2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DZW4 | 0.0 | A0A2K3DZW4_CHLRE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 3e-12 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cre03.g209953.t2.1 |