PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre03.g209953.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

AP2

Protein Properties

Length: 1474aa MW: 141043 Da PI: 7.12

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre03.g209953.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.1	1e-08	41	89	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 g++GV++++ + rW A I + +slg f+ +e+Aa+ +++a+++++g Cre03.g209953.t1.1 41 GFRGVCYNRMTRRWQAGIAAH-----GRAISLGAFDAEEDAARIYDKAALRIRG 89 79*************9994.....4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	5.17E-12	41	98	IPR016177	DNA-binding domain
SMART	SM00380	6.6E-9	41	103	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-4	41	89	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.394	41	97	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-11	42	97	IPR001471	AP2/ERF domain
CDD	cd00018	6.63E-11	42	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1474 aa Download sequence Send to blast
MEALAALSGG HGHAPAAGVL SRRKLPSETA QQGQPPLHPL GFRGVCYNRM TRRWQAGIAA 60 HGRAISLGAF DAEEDAARIY DKAALRIRGL KATVNFPVRD YLLPDGALAL DLQVEALLLE 120 AFLSRAVPAD AATAAAVGDV VRQCLGRING ADPADLQEAA EALGPGYMRL MGLIADAAEL 180 LAASAATGVG APGGGGGAAA AGGATGGAGV VSHGSGEAGA GAGTGAGVGI TGNGDAVGAR 240 SGLGREAGGP SVSTDGSQRA DAAAAASLSA GGGVEGLRGA ASCQGPVGAG GPCVGVAPDG 300 GLRRDKPGHS PSPSAAEGAV GGTTVAARRA GPPEAAAAPD GAGAQLPPIP PIATPPYLPP 360 NFMQNMCQLL ATHTRATESD QQRQRGKDAP AAAAPPPPAV VVAVRQLEEF GFPLPLLMQG 420 ADHLASAGIV SPQHFKMLQA AVGGGAAAAG AKRKQPEDEA AEALPHKDHS GDVDGQATKR 480 RELERVGEPA PAAPAASGRT RSPSVPPAGA GLRLDPSSAV VMAAATVAAG AAGGVPLAAM 540 PTAPTEQAAV MTAIENAAAA VAAMPPVGPV PPALALAGSG LIGGGGGPPL KHIGLGRRLF 600 QAIQGQLPPG CELESLMPPK CGFVGVLYAA PPSCSASGNQ AGAGLWDGAA VRDLGLYSSD 660 RDARQAVNSA ARLLATTLAA ATGGGGSGVG AAGSAGPGAG DAGAGRGAMA PPAMRGAGAG 720 ARGGGGLASI NSASLFRSSG NSSMSAGGTG AVAPAPATAP PAGARHGGRP LEPAPSAGGL 780 STLRSGPSFS GPMRAHAAAG AVTAGGRLPA AGSLAAAGST GRRDGPLRQT PAPPPLLRSE 840 MSAGGHQGVG ADRVSGGGGV GGPGPVVRRR PSGGASASMS TAPSGSTWLQ QSLEGRGSVM 900 GPYLVGGPDV ADDGSVNLLC QILVPQAEPL TSDDLNNVIA RSLTPAALQS LLGNNVTAAA 960 AAAAVANGLS AANRGPLLAP ARPSQPNGTA RPAPPFMPGP ARGGAAAAPP PPGMDPNPFR 1020 QQQSLNLQED MGSPPNPFRQ HQRSGLGAGS GSGSAAARGT NWLAAPPGPA EAKEGQELTI 1080 EQQQDLLRQA KAAAAAARVS GSGSGAAAAA DVRRRTTAAD EALGRMPSLS GGVAAAVAAA 1140 ADEVLYAGTA GTAFGSADAA AAGGGGGTHV DLFFSRRMIA AASGCVSGGG AGGSGAVRRT 1200 SGSGGAAAGS GAGASPPPPP LAPKQEASGE GLPLGPCIPA GAAARGGAGA ALPLGPPPPP 1260 LQPPGDLDMD DAAEPPAPES ATVSKGRSEA ASPPLPEVAA APDSAAAAAA AAAVIGSGSA 1320 SFVKGGAEPS PDTEMADAPA DAPAAAQAWN RGGSRDGANT SNSAATARAQ SSGLPDASAC 1380 LTGDADVTQN APSRATGAAE GNAPSANGLS RSADRSGDCS AGGGGDGDGS AAPRLQRAVS 1440 REFAAVANLV GVGLQEALAK LAKTGHQESP PSK*

Sequence ? help Back to Top

Protein Sequence Length: 1474 aa Download sequence Send to blast

MEALAALSGG HGHAPAAGVL SRRKLPSETA QQGQPPLHPL GFRGVCYNRM TRRWQAGIAA  60
HGRAISLGAF DAEEDAARIY DKAALRIRGL KATVNFPVRD YLLPDGALAL DLQVEALLLE  120
AFLSRAVPAD AATAAAVGDV VRQCLGRING ADPADLQEAA EALGPGYMRL MGLIADAAEL  180
LAASAATGVG APGGGGGAAA AGGATGGAGV VSHGSGEAGA GAGTGAGVGI TGNGDAVGAR  240
SGLGREAGGP SVSTDGSQRA DAAAAASLSA GGGVEGLRGA ASCQGPVGAG GPCVGVAPDG  300
GLRRDKPGHS PSPSAAEGAV GGTTVAARRA GPPEAAAAPD GAGAQLPPIP PIATPPYLPP  360
NFMQNMCQLL ATHTRATESD QQRQRGKDAP AAAAPPPPAV VVAVRQLEEF GFPLPLLMQG  420
ADHLASAGIV SPQHFKMLQA AVGGGAAAAG AKRKQPEDEA AEALPHKDHS GDVDGQATKR  480
RELERVGEPA PAAPAASGRT RSPSVPPAGA GLRLDPSSAV VMAAATVAAG AAGGVPLAAM  540
PTAPTEQAAV MTAIENAAAA VAAMPPVGPV PPALALAGSG LIGGGGGPPL KHIGLGRRLF  600
QAIQGQLPPG CELESLMPPK CGFVGVLYAA PPSCSASGNQ AGAGLWDGAA VRDLGLYSSD  660
RDARQAVNSA ARLLATTLAA ATGGGGSGVG AAGSAGPGAG DAGAGRGAMA PPAMRGAGAG  720
ARGGGGLASI NSASLFRSSG NSSMSAGGTG AVAPAPATAP PAGARHGGRP LEPAPSAGGL  780
STLRSGPSFS GPMRAHAAAG AVTAGGRLPA AGSLAAAGST GRRDGPLRQT PAPPPLLRSE  840
MSAGGHQGVG ADRVSGGGGV GGPGPVVRRR PSGGASASMS TAPSGSTWLQ QSLEGRGSVM  900
GPYLVGGPDV ADDGSVNLLC QILVPQAEPL TSDDLNNVIA RSLTPAALQS LLGNNVTAAA  960
AAAAVANGLS AANRGPLLAP ARPSQPNGTA RPAPPFMPGP ARGGAAAAPP PPGMDPNPFR  1020
QQQSLNLQED MGSPPNPFRQ HQRSGLGAGS GSGSAAARGT NWLAAPPGPA EAKEGQELTI  1080
EQQQDLLRQA KAAAAAARVS GSGSGAAAAA DVRRRTTAAD EALGRMPSLS GGVAAAVAAA  1140
ADEVLYAGTA GTAFGSADAA AAGGGGGTHV DLFFSRRMIA AASGCVSGGG AGGSGAVRRT  1200
SGSGGAAAGS GAGASPPPPP LAPKQEASGE GLPLGPCIPA GAAARGGAGA ALPLGPPPPP  1260
LQPPGDLDMD DAAEPPAPES ATVSKGRSEA ASPPLPEVAA APDSAAAAAA AAAVIGSGSA  1320
SFVKGGAEPS PDTEMADAPA DAPAAAQAWN RGGSRDGANT SNSAATARAQ SSGLPDASAC  1380
LTGDADVTQN APSRATGAAE GNAPSANGLS RSADRSGDCS AGGGGDGDGS AAPRLQRAVS  1440
REFAAVANLV GVGLQEALAK LAKTGHQESP PSK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre03.g209953.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DZU7	0.0	A0A2K3DZU7_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9981	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G39250.1	4e-12	AP2 family protein

Link Out ? help Back to Top
Phytozome	Cre03.g209953.t1.1