PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre03.g201250.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

C2H2

Protein Properties

Length: 404aa MW: 42046.9 Da PI: 5.2518

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre03.g201250.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	173	197	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k +++ +L+ H+++ H Cre03.g201250.t1.2 173 FYCEVCDKQYTTARQLEEHLSSydH 197 79*****************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	2.5E-16	72	119	IPR000467	G-patch domain
PROSITE profile	PS50174	17.451	74	121	IPR000467	G-patch domain
Pfam	PF01585	3.9E-15	75	117	IPR000467	G-patch domain
SuperFamily	SSF57667	3.98E-7	169	205	No hit	No description
Pfam	PF12171	2.0E-6	173	194	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	9.328	173	202	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	175	197	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MNPLAGVAVV DPRLAAPRGD EFSVSFQEEK RRRLEQLEWD DDVWGHRGIG GTVGGPEDDE 60 DDAGGGSASG PIASSNIGFK LLQKMGWTEG KGLGRQENGI VEPIRAGVEA GVRLGLGKQE 120 EDDTHTAEAT ANRKRLEIEV AAQEDEEAAR KREATAEVLQ KRAEDVKEML QTFYCEVCDK 180 QYTTARQLEE HLSSYDHHHR KRLAEAKSAM AERSRGDRQR REQKVADKEM ARLQKQIEVA 240 QARSRQQQPG GGGGGGLGGM SGGMPPPLPP GEVQAEQPPL PPLPPGAPPP PLPSSGPQPP 300 LPPGEAQPPH PPPEPVFSGS SAEAAPPAPL TVAPGTTGIS MRLGGGGAGR GGLGGAGGRA 360 SGMMMARGGI KRPGAPLGLA GRGGKPAAPV AGFGLDSDDE EGS*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MNPLAGVAVV DPRLAAPRGD EFSVSFQEEK RRRLEQLEWD DDVWGHRGIG GTVGGPEDDE  60
DDAGGGSASG PIASSNIGFK LLQKMGWTEG KGLGRQENGI VEPIRAGVEA GVRLGLGKQE  120
EDDTHTAEAT ANRKRLEIEV AAQEDEEAAR KREATAEVLQ KRAEDVKEML QTFYCEVCDK  180
QYTTARQLEE HLSSYDHHHR KRLAEAKSAM AERSRGDRQR REQKVADKEM ARLQKQIEVA  240
QARSRQQQPG GGGGGGLGGM SGGMPPPLPP GEVQAEQPPL PPLPPGAPPP PLPSSGPQPP  300
LPPGEAQPPH PPPEPVFSGS SAEAAPPAPL TVAPGTTGIS MRLGGGGAGR GGLGGAGGRA  360
SGMMMARGGI KRPGAPLGLA GRGGKPAAPV AGFGLDSDDE EGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	33	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre03.g201250.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001693361.1	0.0	hypothetical protein CHLREDRAFT_147577
TrEMBL	A0A2K3DZD0	0.0	A0A2K3DZD0_CHLRE; Uncharacterized protein
STRING	EDP03387	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5642	6	6
Representative plant	OGRP6370	7	8

Link Out ? help Back to Top
Phytozome	Cre03.g201250.t1.2