PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g200431.t1.1
Common NameOCP3
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family HB-other
Protein Properties Length: 513aa    MW: 54364.4 Da    PI: 10.6429
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g200431.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.38.4e-06275322653
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         +++ e l++Le+ + +++ ps +  + L +  +L+ ++V+ WF  rRa
  Cre03.g200431.t1.1 275 RISGEALRTLESIYDRTPFPSGDVVRGLYELHRLSRDVVSEWFAARRA 322
                         58899******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0029270331IPR001356Homeobox domain
CDDcd000860.00155272322No hitNo description
SuperFamilySSF466892.47E-7272323IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-7275323IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAALLLLPLG HRALRRLLGP QVDTPTQVPA RSGVICNGRN DGASGGKRRR SSGGKSRRVD  60
FQGPTVDDAL WYEGDKAPAA PSTSSPSLRP PPSGPSRPQH SSPASSRGAY QRTGNQGGNG  120
RRGRGAREDD DEDEGDVRGW WEKPEERNLQ SFAPRALEQW QEERLQLAYS TGRRKANIQE  180
LARELDLDRA VVLAWFKEFS LRPAGEREAI LTARRGEDAV RKVEQASRDA AEAATGQAKA  240
DARIAEAATG APGAAGSGFI PYFTRKQLGA DKTKRISGEA LRTLESIYDR TPFPSGDVVR  300
GLYELHRLSR DVVSEWFAAR RAADGITSST QKRTARPSLR ERDRDVEGAF AGPEEPVSGP  360
QESASLLSML GGNNMTPAAA AAAGPGAPQK PAEPVVVTLS KREMAALRSS LPSPNKYKGR  420
QLAEKMGIKS SDSSGRSGGP QIQIQDVQYV QEPEAAPEAV KQRLKASWRY RAAAGAGGAG  480
GGGAGPAAGA AGGRLRLRTR GGGNGSGRGS DE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.196760.0normal conditions
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g200431.t1.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2716770.0EU271677.1 Chlamydomonas reinhardtii Ocp3 (OCP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001699378.10.0predicted protein
TrEMBLB0F9V80.0B0F9V8_CHLRE; Ocp3
STRINGEDO986240.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP69271618
Publications ? help Back to Top
  1. Lee JH,Lin H,Joo S,Goodenough U
    Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family.
    Cell, 2008. 133(5): p. 829-40
    [PMID:18510927]