PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre03.g198800.t1.2

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 456aa MW: 46332.8 Da PI: 8.256

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre03.g198800.t1.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.3	3.4e-13	35	80	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++eE+ ++ + k lG+g+W+ I++ + +Rt+ q+ s+ qk+ Cre03.g198800.t1.2 35 QPWSEEEHRAFLAGLKSLGKGSWRQISQQFVPTRTPTQVASHAQKH 80 79**************************99**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.753	29	85	IPR017930	Myb domain
SuperFamily	SSF46689	8.22E-15	31	84	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-10	33	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-12	33	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-13	34	83	IPR006447	Myb domain, plants
Pfam	PF00249	9.0E-11	35	80	IPR001005	SANT/Myb domain
CDD	cd00167	2.35E-9	36	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MSGEPSPLEE QPDLDNSEDL HNSSDAANAS SRKGQPWSEE EHRAFLAGLK SLGKGSWRQI 60 SQQFVPTRTP TQVASHAQKH FMRVAGATKR KSRFTALETE VLPPAKIAHV DSRQHGSEQT 120 EQLEPQPQAQ ARQPAMAPQA QQAGAPAASQ FGPMAAFGPM AAFPFMNPMM FGFPAPFFPP 180 FMCPPPAFAA AAMQSMNAMQ KSGMAPGMMM PPLFAPMMAA MAAASTPFFM AQQMQAMAAQ 240 AAAAQQQAAQ AAAAQQQQQY AATQAATSGA ATTAGTATAT SDTANSDDAV RRRHASVAAP 300 SVGNNAGLGG SSPAVKAEPV LHVQIPARPP SACGVAGSTN TSPGRVAAAT PGPDAVAATG 360 GESPAAAQAG ASNAAPPREQ AKSCGGAPGG VGARCSGSGV AVPAGGCGLE QQQQPLQRRV 420 SGGRGEEGGA ALPFHASSHS AFRPPQAQQE IKAES*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MSGEPSPLEE QPDLDNSEDL HNSSDAANAS SRKGQPWSEE EHRAFLAGLK SLGKGSWRQI  60
SQQFVPTRTP TQVASHAQKH FMRVAGATKR KSRFTALETE VLPPAKIAHV DSRQHGSEQT  120
EQLEPQPQAQ ARQPAMAPQA QQAGAPAASQ FGPMAAFGPM AAFPFMNPMM FGFPAPFFPP  180
FMCPPPAFAA AAMQSMNAMQ KSGMAPGMMM PPLFAPMMAA MAAASTPFFM AQQMQAMAAQ  240
AAAAQQQAAQ AAAAQQQQQY AATQAATSGA ATTAGTATAT SDTANSDDAV RRRHASVAAP  300
SVGNNAGLGG SSPAVKAEPV LHVQIPARPP SACGVAGSTN TSPGRVAAAT PGPDAVAATG  360
GESPAAAQAG ASNAAPPREQ AKSCGGAPGG VGARCSGSGV AVPAGGCGLE QQQQPLQRRV  420
SGGRGEEGGA ALPFHASSHS AFRPPQAQQE IKAES*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre03.g198800.t1.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3DZL3	0.0	A0A2K3DZL3_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP322	15	29
Representative plant	OGRP2767	5	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	2e-23	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Cre03.g198800.t1.2