PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g197100.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 479aa    MW: 50796.3 Da    PI: 10.2544
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g197100.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-132075148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                        +g W++ Ed  l+++v+++G g+W+ Iar+++         gR +kqc++r++ +l
  Cre03.g197100.t1.2 20 KGGWSAVEDTTLKRLVEEFGEGNWSVIARHLNaslgkpsdSGRIGKQCRERYNHHL 75
                        688*************************************************9886 PP
2Myb_DNA-binding53.26.7e-1781123145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++WT+eE+ llv a+ ++G++ W+ Ia+ +  gRt++ +k++w+
  Cre03.g197100.t1.2  81 KDAWTEEEESLLVAAHLRYGNR-WSDIAKVIR-GRTENAVKNHWN 123
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.0E-141977IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-2519122IPR009057Homeodomain-like
PROSITE profilePS5009010.0812075IPR017877Myb-like domain
PfamPF002492.1E-122074IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-222283IPR009057Homeodomain-like
CDDcd001673.01E-112375No hitNo description
PROSITE profilePS5129425.3776130IPR017930Myb domain
SMARTSM007179.4E-1680128IPR001005SANT/Myb domain
PfamPF002491.1E-1481123IPR001005SANT/Myb domain
CDDcd001671.88E-1283126No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1984129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSGDSSAGER RRRYPLANIK GGWSAVEDTT LKRLVEEFGE GNWSVIARHL NASLGKPSDS  60
GRIGKQCRER YNHHLRPDIK KDAWTEEEES LLVAAHLRYG NRWSDIAKVI RGRTENAVKN  120
HWNATLRRKD GDKAIRSGTA PQSCVLKNYM IRLHLLPGPP VGPTAATTAL PDNAAAAVAP  180
LPAKPVAKRA RSSVAAESPK VAGGVHPADP AQPGPSPSSS TSTHDGVSSS PHRSFDASVA  240
SPAGGAAANR KRPRIITFAA APDPAAAIAA STLSRHASPA PLAAMPMQDG MPMPLFAPLS  300
LLAVPNLTGQ VTAAPTAPVA MRMQFQMQQQ QQQDMHPQMQ QQVAMQPSAP AMRRPSPRPQ  360
PVQQQQQQQQ MRGSSQPRTS QPPQRGSAPL GWASDSAEDS LYGSPVSDRF VDMQFEEDYL  420
CSHGAGGQKA AAIAAPASYK AADETQGQEL QLQLAGVGSS EVQAAQIMLA LRSLAGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-37191293104C-Myb DNA-Binding Domain
1msf_C1e-37191293104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1813ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.123456e-45nutrient deficiency
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g197100.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DYQ30.0A0A2K3DYQ3_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.11e-39myb domain protein 64