PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre03.g193900.t1.2 | ||||||||
Common Name | CHLREDRAFT_147364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | NF-YC | ||||||||
Protein Properties | Length: 232aa MW: 23961.2 Da PI: 9.2547 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 29 | 2.3e-09 | 96 | 162 | 18 | 84 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 +lP + ++k++ d+++++ sae ls a e+f+ + ++ a krrt++ d+++++ Cre03.g193900.t1.2 96 AASLPASWVRKVVNLDPEIQRCSAEGVLALSAAAEVFLSAVCAKATAAAAAGKRRTVRLDDMEKCIR 162 5789*********************************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50118 | 12.74 | 1 | 72 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.8E-14 | 2 | 67 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 8.38E-10 | 2 | 53 | No hit | No description |
SMART | SM00398 | 9.3E-7 | 2 | 73 | IPR009071 | High mobility group box domain |
Pfam | PF00505 | 1.4E-11 | 2 | 68 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47095 | 1.31E-13 | 3 | 67 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47113 | 1.33E-11 | 91 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-8 | 97 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-12 | 99 | 166 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAPTAYMLFC NQHRESVRQR LAAEGQEKIA VTVVAKELGQ IWKALTEEEK AKYRAQAEEQ 60 KQQQQQQQAG DGSETQGEGN AEGGQRAGSP AKAAAAASLP ASWVRKVVNL DPEIQRCSAE 120 GVLALSAAAE VFLSAVCAKA TAAAAAGKRR TVRLDDMEKC IRGDKRLMAA GFTAVINMVS 180 AAAATEAEGK AAAVAAAGAP PGKKQKVDKA AAPAAGADKH NSIEKAFGMA S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre03.g193900.t1.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001693110.1 | 1e-158 | predicted protein | ||||
TrEMBL | A0A2K3DYI1 | 1e-162 | A0A2K3DYI1_CHLRE; Uncharacterized protein | ||||
STRING | EDP03136 | 1e-158 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4674 | 11 | 11 |
Link Out ? help Back to Top | |
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Phytozome | Cre03.g193900.t1.2 |
Entrez Gene | 5718711 |
Publications ? help Back to Top | |||
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