PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g185950.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C2H2
Protein Properties Length: 990aa    MW: 100242 Da    PI: 10.1257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g185950.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05631652123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+Cp+Cg++  r++ Lk+H++ +
  Cre03.g185950.t1.1 631 YPCPNCGRTM-RPEALKSHMKAC 652
                         99********.*********987 PP
2zf-C2H210.80.0015699718323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C +Cg+   r++ L++H+r++
  Cre03.g185950.t1.1 699 CANCGRKM-RPEALVKHQRMC 718
                         ********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139130.0011231252No hitNo description
SMARTSM007342.2305328IPR006642Zinc finger, Rad18-type putative
PfamPF139139.5E-8305327No hitNo description
PfamPF139130.0011397418No hitNo description
SMARTSM007342.2471494IPR006642Zinc finger, Rad18-type putative
PfamPF139139.5E-8471493No hitNo description
PfamPF139130.034558577No hitNo description
SMARTSM007345.6630653IPR006642Zinc finger, Rad18-type putative
PfamPF139130.0017630652No hitNo description
PfamPF139132.3E-4695718No hitNo description
PfamPF139138.4E-7794817No hitNo description
SMARTSM007340.25937960IPR006642Zinc finger, Rad18-type putative
PfamPF139131.6E-5937959No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MDYGNSPYST VTLGNGFGGL ARSHSLARSS SLRNSTGSIG NPGGGGFTFD AAGGARASGG  60
GAGGYGGAGG AGAGAGPGYS RTNGADPYGR PSSGRGGAGM QQLGGGGYAG SGGGMASGRI  120
SNSGGAPLYS GAGGMVAGTT QRRPSTSGGW EAATAPAGKV PLTQRLAQVK AVYAAAKFNH  180
SLDSVLRSGT SALRPEARAA ASSTMRPGTS GGGARPQTPT RREGQRPIGF TCYLCGQQYG  240
SQSLMKHIPQ CQKKWVMVES QKPRKEQRPL PPMPPELEAG ELPYTTQEIE EFNQRMYGYW  300
DKVSLVGCPI CARTFRPDAF ERHAKVCTWD NPGGPLGPNK HAPPPGARPG AASPARPKSG  360
YGGGGGGGGG GGGGYGAPPS PSGLPARREG QRPIGFTCYL CGQQYGSQSL MKHIPQCQKK  420
WVMVESQKPR KEQRPLPPMP PELEAGELPT TAAGIEEFNQ RMYGYWDKVS LVGCPICART  480
FRPDAFERHA KVCTPSNPGG PLGPNKHAPP PGARPGAASP ARPKSGYGGG GGGGGGGSGS  540
GGGTPARREG ERPRAYVCYL CGSQFGSQSL KIHIPQCYEK WLKVEANKLP KERKQPPPPP  600
PELDQPLPTD TAGIDEFNSK MFAYYNGVSL YPCPNCGRTM RPEALKSHMK ACTADRPMAR  660
PGAGAGGGGG GGGGGGAARG GGGAPGEYDD GGGMELEPCA NCGRKMRPEA LVKHQRMCTP  720
SKPMKPVRPA GGSSAAAASS AGGGGGGGGG GGYGDDGDAG PEPPKAAYRL PPDAGGGGGG  780
GGGGDYYGDE GEEPRVQCGT CGRSFLPGAY EKHSRVCAKV FAGKRKVFNS AAKRVGGTDA  840
AAYVNPRTLT ASSPARPSPP SGPAPSGTGG RPRAGGGGRA GGGGAGGGGS GNQPAWKAKS  900
NALRQAMSEM RKVSAALARG EDIRNIPHVP SAPDPSLVQC PCCGRRFSAQ AAERHIPRCG  960
GIQAKPKFLK AGTGGAGKGA PDSKPLPRW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1524537SGYGGGGGGGGGGS
2876883GGRAGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g185950.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001692001.10.0predicted protein
TrEMBLA0A2K3DY330.0A0A2K3DY33_CHLRE; Uncharacterized protein
STRINGEDP044910.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP778756
Representative plantOGRP1220322