PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g177700.t1.1
Common NameNit2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family Nin-like
Protein Properties Length: 755aa    MW: 76517.1 Da    PI: 6.0986
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g177700.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK34.54e-11722754335
              RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKri 35 
                         k++++edl+++F l +k+AA++Lg+c+T+LKr+
  Cre03.g177700.t1.1 722 KRLRFEDLQAQFGLGLKEAANNLGICATTLKRA 754
                         899****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020422.6E-7724753IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MNTGMAYNNG GELKQRLSRA LLDVSGTLAT VKSGALVQVW MPECTHDGTI VLSCQGLPFA  60
VAGVGDLLAL FRCVSVRYRF STDVMKPSLM GAIGRVYSTL EPEMSHNVQK YDKQVYLRVS  120
EAQRCRVHST LIIPIFGSDA RDTPLAVFEL VQGDRDVTFP AVLSQLSASL QNVNLFTIDL  180
ETAATAAGLR KWPMHIDMLP ASEFSSGAAG TAAGAAGGTA AAGSGPARLS PNGEGQGLHR  240
RLGSARLADV AEDKEPAASS NVIATEEREH QSPSTSRQDE VGSWGAKRTS LTRVSTGNLH  300
GAGGGAAGSG PVHMPTAAGG GATAGAGGIK LSSSPQTMQG PLAAAGTSPP GAGAGTGVPS  360
VALSMPVPVP VQGMSQLTAS GSGHAAGPGG AAAGLAGAGG SGLLPGSAPA LLKLETAGSA  420
GTSDGLGARQ AMTPPAPVPG PPLDPNNAAQ LMAWLSQQGN AGNAALDQIK ALLEQQQQQQ  480
QQQQQQQQQQ QQMQLQQQLQ QLQALQQQQM QQQAQSQALQ VRQARMSESM SVPGALAAQQ  540
LQLQQQQQQQ QAPHQHQQGP MMMDVTVGSS GPLQHLAGAA VSTPSPPTTG SGLAQACSGD  600
TNANAAGPNT LVAAVAAAAA AEQQQQQQQQ AAAQMQQAAI QQAVAQASTA AAAAASMNNK  660
LSRSGSAPRV QAAAAGAAAG DAGDDGDEED ISSGGDDDDS DDERGGGGNP RNNNRVGGGA  720
GKRLRFEDLQ AQFGLGLKEA ANNLGICATT LKRA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.77240.0normal conditions| nutrient deficiency
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g177700.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3116470.0DQ311647.1 Chlamydomonas reinhardtii nitrate assimilation regulatory gene (Nit2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946865.11e-131RWP-RK domain-containing transcription factor
TrEMBLA0A2K3DXI10.0A0A2K3DXI1_CHLRE; Uncharacterized protein
STRINGXP_002946865.11e-130(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP376056
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.12e-14Nin-like family protein
Publications ? help Back to Top
  1. Camargo A, et al.
    Nitrate signaling by the regulatory gene NIT2 in Chlamydomonas.
    Plant Cell, 2007. 19(11): p. 3491-503
    [PMID:18024571]