PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g176651.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 1127aa    MW: 111556 Da    PI: 4.5944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g176651.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-09194237348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +WT+eE+ l+++a + +G + Wk+ ++ +g +R    + s+ qkyl
  Cre03.g176651.t1.1 194 AWTPEEETLFLKAMEAYGRD-WKKGSELVG-TRDHRAIASHAQKYL 237
                         7*****************77.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.655187241IPR017930Myb domain
SuperFamilySSF466891.57E-9189239IPR009057Homeodomain-like
SMARTSM007173.6E-6191239IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.9E-8193239IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-5193237IPR009057Homeodomain-like
PfamPF002499.2E-8194237IPR001005SANT/Myb domain
CDDcd001678.32E-5194237No hitNo description
SuperFamilySSF1027121.83E-17556683No hitNo description
PfamPF013989.6E-10557662IPR000555JAB1/MPN/MOV34 metalloenzyme domain
Gene3DG3DSA:3.40.140.106.4E-15576683No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MDTANDEALA RALAAQGVTM NPYATVYDDP DYAGDDYADD SEDSDYGGPK KKGGRGRGRG  60
AGGGGGRGRG RGRGRGPAAP GSVAVTPAAM PPSVKMEVKP EPNALAAGLA GITDPASMAA  120
LANLAAAGAS MPGLAGALGA TPGAMPGGLP PMPGGGGVDG LGTGGETDDD DDERTKSGRR  180
RRKDVGKQRQ AGRAWTPEEE TLFLKAMEAY GRDWKKGSEL VGTRDHRAIA SHAQKYLIKL  240
CLAGKPLPAA IARTGAGYTL SGAMLDPYSA AARSYGFKPE LLLRLTHEEL SVALSGLDLD  300
RLPQMYGGRL PNDQAPTAPA ARGSGERQRI RTSSSRKRPR KGGSDDGDDT DGAAANPAVG  360
ALGGIPGLGG TDAASQAVAA AMAAAVAAAA AAAGGNIGLT TQQLMAAAAQ AQLSLAASGL  420
NLALLSGATD SNNTASGLAA ALGGAVSAPL SSLAAALGGG APAGLTPPPL TLPPGTALPP  480
APIPPAPSAA PAAPLMGVPP PPSGLAAQTE YARNRPRREL AGQRATMGET SESLQLVKPQ  540
EFTGQPGSGS PLAQPYTVDM SSWALLAMDF HAHLSNFEVI GLLGGTWHPE TKQLVVIEAY  600
PCRRAEGSDA ATSVELDPTA QVEVQSLMEA KGQTCVGWYH SHPVFEPSPS QKDMDNQRNY  660
QALFKCPTTK LEPFLGIIVG PYDTAMPHPI SVITTFTVQT RNSQLVPYFV RTNVHGLEVV  720
PDQPLVDKLT SMLDTFRDDP GRVDFGELWR NYSYVMADNS VDGLPLTRLA KFRHSLQSRM  780
RDADPTAVRQ VLDTLCAEVQ ARWNINLSTA LAASTDGGAA AAAAAAAAAA AAGAPMDPVA  840
AVNALAAATA AAAVGQPGGQ PTEGSESLLG LLFGDNSEAM AAATQAAANA AAAAAAGAAP  900
PVDGTAPPPM QGPTPTPAAV ADAMALLAGG GGMLSALLAD DDGGAAAAAA AAAAAAAAPA  960
DGSGAVAPGA EAGPGSSLLE AMNEAAAQGG GMDANAFMAA AAAAAAAAGQ GGGALPPNFF  1020
LPGAVPGLFD GTAGGVPPAF DGSQVSGLYA QLAAAGVAGF QPPQEAGAEQ LQPVDGGLAV  1080
AAAAAAAAAA AAAGVPDGSA MTMPPMDPTA VGDPSAAVPP APEAGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16675RGRGRGRGRG
2178183RRRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g176651.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DXF90.0A0A2K3DXF9_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP229888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-09MYB_related family protein