PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre03.g160700.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | GATA | ||||||||
Protein Properties | Length: 598aa MW: 60695.6 Da PI: 7.6058 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.4 | 1.1e-14 | 334 | 368 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg t++p+WRr ++ LCnaCG+y+ ++++ Cre03.g160700.t1.1 334 CAHCGITESPQWRRPLTKKVVLCNACGIYFSRHHS 368 **************99****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.9E-10 | 328 | 378 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.662 | 328 | 366 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.57E-11 | 332 | 376 | No hit | No description |
CDD | cd00202 | 2.27E-11 | 333 | 377 | No hit | No description |
Pfam | PF00320 | 1.2E-11 | 334 | 368 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.9E-12 | 334 | 367 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MTTRLLDAVS AVRPDGRGGR KRQRTDDVNE ALALALLETV RQALDEGEAN PGCAAVTTSD 60 PSDSTQHDPQ SPPRPSLLPR QHVTSGPHSP QLQASALMPP PQLPPLELAS GRRGVNRRAG 120 SRSREASATQ VPLPQEDAGP LTTNESLSPG AALLAAASAA AAAAGAKLEP GIKEGTGVGT 180 TRQVSPRSRF GCSTIADASA LGASELGYLP PPPLLHLLPL PLPPSPETVV PQPARRGSRT 240 PRGAGTPVAI GLQLHAHQHT HTQGLLLQQQ QQQQQQQQQQ AGSASQSRGS ADTTLAETGT 300 TQEAGEEPEE GEEEAYLPRK RQDKSKVGLP GGPCAHCGIT ESPQWRRPLT KKVVLCNACG 360 IYFSRHHSLP KRKKVRGASA QVIPASAKPI FIPPHKELAP SIICDEKLEL DDTPASAAAR 420 AAIQRVHSLL LPAPALSLAG GGAFSVLGDQ APLASTAAQI AGATGRALLE LSASTRTALS 480 LPLMMALPVV GGINRVVQTY LHPHAVAAVA EGAGAGSAGV CLCGLEALGS GLGGLGVELG 540 CYGVGGLGAL EAAGSHALES GGEEAGGGGG VLPPPGLPSL LSLGAMPSQG SAHGSAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre03.g160700.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DWD9 | 0.0 | A0A2K3DWD9_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-06 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Cre03.g160700.t1.1 |