PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre03.g153050.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 1238aa MW: 123842 Da PI: 7.2682

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre03.g153050.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.1	1.7e-18	1106	1155	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ed+++ F+l + +AA+ Lg ++T LKr+CR +G +RWP+Rk+ sl Cre03.g153050.t1.1 1106 RAVTFEDMQAVFHLRVVEAARALGFSATELKRRCRALGFSRWPQRKLLSL 1155 5799******************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.223	1090	1175	IPR003035	RWP-RK domain
Pfam	PF02042	3.0E-18	1108	1155	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1238 aa Download sequence Send to blast
MELGLLQDDV GSPAEADDIL RSLLADDISD APGLIFDNSL AEAGDHGHAT GAPVSAVPGA 60 ASVTGAFDGL LPNLWQLGTA VGPPAPQAQP LPEPLQQQAL LHPTQTQADE VQRRHADVMA 120 WLAASEGMGG IAVSPEVLSF PQAQPGIGLL MGGMQGASAA QYGGGMAGSG LGAGLPERRI 180 SNTSAGAMAA AGAVHPHPQQ LLVPAALSPT AAAVTHGGIA RVSAGSASLA PASVEPMLTS 240 HLTAAARPSL SFSGHAPQQL MQGMLLPPHQ MAAAAQQQQQ QQQQHVLLVQ QQAALQGQPS 300 TMSAGMAAGL MPPVMPQAVA AAVVGNSTSG GTGVPQQHMQ AGSAMGAAPG AQDDRLFAEI 360 EAMPFPRYPH RHHLQHAAMT FVAAYGKTSR GSGTAATLMS GPVPQAPVPV AAELEAAWRG 420 PNAEAPSCVA ASTRGAARRI TGSVWPAGGN ASGSTAGDVV PAALAAAAPE AGERQGPSRL 480 PGVGQGGTVP LVGGAPLAPG AAAPLAPSAA PNAQLLAMLG RPESQHQPQP PAQQPPQQPQ 540 PTARAPHAAA THGHALVQSD QYQMLQSLGS LVQSGNWLGG AGPQGWAVAT EPLLPWAQRD 600 DSFAAAAGGL LGNLGAGGGA AAVAGLSAPV LALSAPVTLR DLHSVCDNMT RGPGEGGVSR 660 FAAGGGEGDG GAGGEGLMSM TAASFDMMGD AAETCTNADT IMRTVSFSRH GGSKGSSSMT 720 TGSSMGSGDR TGERVSAAAY ARPPGPAAAH GEAALRSNEQ SAHQGPAAAA AAAAAAAAAA 780 AAAAAVSAAA AAAAAKVTAG ANATGAKRLA GQSSGVTGAS QDGARSLEPR QQSMPPGSER 840 LPSRTPSDTA RILQLGPEAT KEHSEGNKGE SEADKAAGRA EGQSAAPEPR VRGAAGRRRG 900 TGASRRDRRA PTHGAAGAEE EYGDDEAEGQ RASGTQQKPQ AQQKSETGDG VQSRDPELGA 960 QPEPELEREL LPVRWSLRSR TRPPASVMQK SAGSPDAAKP AKAKPKRAQA AKAQAKARKG 1020 KRQSTKEDSD AGDSSSSTSS RDNSNEPQSA KGSESGSGGG RNHRGGRSGA GAAAKESSGA 1080 GTESDAADGA TAGAAGGGGS AFRRARAVTF EDMQAVFHLR VVEAARALGF SATELKRRCR 1140 ALGFSRWPQR KLLSLQRMAD SAAADKRLAP DQKQAMLAAL ERNRVAIMAR PDTPLEDGIK 1200 VARQVQYKAL HNNRTKGGAA AGAADASGAG DEDDADE*

Sequence ? help Back to Top

Protein Sequence Length: 1238 aa Download sequence Send to blast

MELGLLQDDV GSPAEADDIL RSLLADDISD APGLIFDNSL AEAGDHGHAT GAPVSAVPGA  60
ASVTGAFDGL LPNLWQLGTA VGPPAPQAQP LPEPLQQQAL LHPTQTQADE VQRRHADVMA  120
WLAASEGMGG IAVSPEVLSF PQAQPGIGLL MGGMQGASAA QYGGGMAGSG LGAGLPERRI  180
SNTSAGAMAA AGAVHPHPQQ LLVPAALSPT AAAVTHGGIA RVSAGSASLA PASVEPMLTS  240
HLTAAARPSL SFSGHAPQQL MQGMLLPPHQ MAAAAQQQQQ QQQQHVLLVQ QQAALQGQPS  300
TMSAGMAAGL MPPVMPQAVA AAVVGNSTSG GTGVPQQHMQ AGSAMGAAPG AQDDRLFAEI  360
EAMPFPRYPH RHHLQHAAMT FVAAYGKTSR GSGTAATLMS GPVPQAPVPV AAELEAAWRG  420
PNAEAPSCVA ASTRGAARRI TGSVWPAGGN ASGSTAGDVV PAALAAAAPE AGERQGPSRL  480
PGVGQGGTVP LVGGAPLAPG AAAPLAPSAA PNAQLLAMLG RPESQHQPQP PAQQPPQQPQ  540
PTARAPHAAA THGHALVQSD QYQMLQSLGS LVQSGNWLGG AGPQGWAVAT EPLLPWAQRD  600
DSFAAAAGGL LGNLGAGGGA AAVAGLSAPV LALSAPVTLR DLHSVCDNMT RGPGEGGVSR  660
FAAGGGEGDG GAGGEGLMSM TAASFDMMGD AAETCTNADT IMRTVSFSRH GGSKGSSSMT  720
TGSSMGSGDR TGERVSAAAY ARPPGPAAAH GEAALRSNEQ SAHQGPAAAA AAAAAAAAAA  780
AAAAAVSAAA AAAAAKVTAG ANATGAKRLA GQSSGVTGAS QDGARSLEPR QQSMPPGSER  840
LPSRTPSDTA RILQLGPEAT KEHSEGNKGE SEADKAAGRA EGQSAAPEPR VRGAAGRRRG  900
TGASRRDRRA PTHGAAGAEE EYGDDEAEGQ RASGTQQKPQ AQQKSETGDG VQSRDPELGA  960
QPEPELEREL LPVRWSLRSR TRPPASVMQK SAGSPDAAKP AKAKPKRAQA AKAQAKARKG  1020
KRQSTKEDSD AGDSSSSTSS RDNSNEPQSA KGSESGSGGG RNHRGGRSGA GAAAKESSGA  1080
GTESDAADGA TAGAAGGGGS AFRRARAVTF EDMQAVFHLR VVEAARALGF SATELKRRCR  1140
ALGFSRWPQR KLLSLQRMAD SAAADKRLAP DQKQAMLAAL ERNRVAIMAR PDTPLEDGIK  1200
VARQVQYKAL HNNRTKGGAA AGAADASGAG DEDDADE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre03.g153050.t1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001697479.1	0.0	RWP-RK transcription factor
TrEMBL	A0A2K3DVU2	0.0	A0A2K3DVU2_CHLRE; Uncharacterized protein
STRING	EDP00141	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-15	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Cre03.g153050.t1.1