PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre03.g149350.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | Nin-like | ||||||||
Protein Properties | Length: 1729aa MW: 174688 Da PI: 6.9539 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 62.1 | 9.5e-20 | 1562 | 1610 | 3 | 51 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ei+ + l+k ++lpi++AA L++++TvLK+ CR++ ++RWP+Rk++s Cre03.g149350.t1.1 1562 REITKHALRKVYHLPINEAAAALNIGVTVLKKYCRKFRVPRWPYRKLQS 1610 689********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.472 | 1547 | 1631 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.4E-19 | 1564 | 1610 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 1729 aa Download sequence Send to blast |
MDTGSAAIAA DAAVSKDSND SQVAAEIAHP GCGYQATQKC KDSGTGRPGE VDLGGDVKDT 60 QLVKAPADAA NSAMNTCGRL SGPKAPGGGG PPLPLKAMKE AGSGAGLDGE SRVHFLQEAF 120 LTISEELAAQ GVNPHAVIAA ASNSPTASRG ASSGGVAAAV AAAAFILPAV RPLSAPTTAA 180 IPVVMAGGGS GVVPAPLPTM PSLTPSQAQT QSCANAAADA ASPTAASGGG GPPASAPLLP 240 DGPAAPAAPA IGGGNGGGDA AAMGDAAAAA AAGGFDFLFD AFHAFVHHDG PTADANTVAA 300 EASPASKARP TSQQPTAVQT ADRDQSTCRA AGMQPPPPQS ALSGVATAAR ANGRSVTMFD 360 VWAAGEEGGS DGGNGAPATD TDPIQQPSAA PPTAEGDGTA QQQQADSHGG AAAGSTAVEA 420 IAGASSKTLA APKPVRLSPF SGGGGAVSAF AGPATTCISP APMDAMDGSD GDGIGRGDSE 480 GGKGFGGASR RASRRGGGAA GGATPMRLSN ALSLLGAASA GGGYMDLLGP GDMFMDSGVD 540 PLADILMDAM RPSLTEIPVV AMPAAAAAAA AAAGGAAAEP AGRSGVPRSS LATLNRMLMS 600 EGRQQPQPLQ SQLVQQMQQQ SAGVSSAPPG SGGLAAACAA GSNTDPRHCL PSPAAVVAAA 660 AVAAAQQQQH QLSSPPLTGG QPQHQQQLLH GSRVVQAQAG SYESIMGGGL SAVALMDLEA 720 MSRHQLSAPA ILTRLPSGSG CAAGVKQFYQ QQQQQQQQQQ QQQQQQQPHQ PHQQQMQQMQ 780 QQAVQQQQQQ HAAFAHQQQQ QPMPQQQQPH PQPQQTATSS LLQDVLSTAR AVLGNATTVG 840 SMFPAPAAGS HSNTAFANAH VNKAMLQSLP ASAGSGVPLF TAHQQQQLMQ HHQQLMATQH 900 ASSNSAGTTP TGGAAHGVPG SVPGGGSAAI MQPGPVVSAP SPWAPQALVQ LPPAAAPPAG 960 ATGLYQLQQT QQVQQSQHLQ QTHTVGGPPA LMQPQQQHLQ QQHLHPMSLS QPLPSHNAPM 1020 MPTSQAPPPH QLPLPQHQQH LLSQQQLQSG GIQRSISMGH YRMGPETVEL VDAQRLQKQA 1080 QQQQQQVRSL QQPSHAQQQQ QLHLHHFQQQ LPAPMMISPV GPPISTMIQN HQQQQTLRPP 1140 SVPPIFASDL AVGAAAHGGG APSISTSTGN SSSAAIHIKV AAHAMPTGPL FVGSYGPTQQ 1200 QQQQQQQNLM RALEEARRSA GQQQPAGSSG GHGGGAGDNG VPCRGFARTS SGSTAGGGSA 1260 HHHQQHQQQH QQQQPYQQQQ QPALADGCNS PPAGPASRNP SGRSLLIRHT SGLARTTSAA 1320 ATAAAGGASG ITSPRSPAAA AAAGGGPGTP RSRSFRQQQS QQQRSDVPPP SSLLGSGTFL 1380 AGDMGIKLED GSTAPVGYLG AAAAAVPTGA APTAALAAAL AAGVMRRGGG SDDGGAGAPA 1440 AASGDSGEGS GADADAAGGT VRRSRREPRG GVKTSRSGGA GGRRRRAGDD DDAPYETDDA 1500 EEEESSDGSD SDLDDDFLGG GGGGRRSRKL GRDGGDDDVD GGYYVDDNSV LVVRAVKDGQ 1560 RREITKHALR KVYHLPINEA AAALNIGVTV LKKYCRKFRV PRWPYRKLQS MGKLIESFQR 1620 YKKGALGAGN TDEAERCEAV IQSLYRFREE VYDNPDKDID ESVKKLRQAN FKIEYRQRQG 1680 QTQGAPSTAA AAADILIEDG IGMEGVAMEA GRGGAEGGSS STSEAVAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre03.g149350.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DVL0 | 0.0 | A0A2K3DVL0_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP84 | 16 | 50 | Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-19 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cre03.g149350.t1.1 |