PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre03.g149201.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | MYB | ||||||||
Protein Properties | Length: 1103aa MW: 109411 Da PI: 7.6378 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.4e-11 | 47 | 92 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W++ E + ++av+ lG+ +W +a+ ++ +R+++qc+++w++ Cre03.g149201.t1.1 47 KWSAAEIDAVLKAVAALGSSdeiNWVEVAKSVP-TRSGNQCREKWRN 92 8********************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 28.7 | 3.1e-09 | 100 | 142 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+ E+ + +++ q G+ W+ Iar ++ gR ++++k++++ Cre03.g149201.t1.1 100 KEPWSSREEYIVCRVHCQVGNQ-WADIARFLP-GRAENSIKNHYN 142 679*****************99.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.396 | 40 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.59E-21 | 43 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 44 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.89E-10 | 47 | 92 | No hit | No description |
Pfam | PF00249 | 1.5E-11 | 47 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-15 | 47 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.2 | 95 | 149 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-7 | 99 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-7 | 100 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-4 | 102 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-15 | 102 | 148 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1103 aa Download sequence Send to blast |
MTAASAKDDK GAVAAKDRAT AIAKQSSSGD MAGASGKKGK APKQSRKWSA AEIDAVLKAV 60 AALGSSDEIN WVEVAKSVPT RSGNQCREKW RNDLRPDISK EPWSSREEYI VCRVHCQVGN 120 QWADIARFLP GRAENSIKNH YNATLRSKAE AKGTSLLWVY GKQVLANGGC TSLELLNRAL 180 QMYADIPNVE PLESFAVDDE TLDIGGGGGS GGSGGRSGGG ALRPVARGGS LSGAGRRPRK 240 KHRRWGSGSS DETESGEDVL SSFSDSTDTE GGGRTSHRES AGARAAYVAA AAVAAAPCVL 300 ATDEAAAPLA PAVPASPAAG TLAAGGFPAP SPTPTPSGRH HVCAVRHGPA GRSPMAAARR 360 AADTAAVTTA TALPPDPFSG AWCDAGGGLC SPGGFGSHAS LGDDWLKHEG GELSPTALGF 420 HMSPRGAADV VRDFFGGPGP DAPQARKRSP TAGASPTVDA SSAGAGLGTA AGGMSRAGSG 480 LHRSRSASKT GAAAGMRLSL GVVAYSPTGR TSPPPPPVVV MSECDVFCMP PSYHPALDGS 540 SPHPLLGPVA PQQQPLQQQA QRHEGPAFAG QLPHLSPRGL CPAGQRGGAV SSAIQRGCSA 600 RQLQPQSNPA PLHALGAGPA RTASPPSHMA VEDTLMVAAS QGLDDFVADL GDLSDLGNIG 660 DCGGTCSAGA LRDTGDAGRA AGGRVAAGAS TLSMSSSDEA AGGALGAAAV TSAKVCAAAG 720 AAAASSCVSP PLLSPTERWH KSIFDEMGDG VELAELLADI HCDGAAAAAA LSIRPSSGGG 780 VEAAAVAEAA VGSGDGSGHD HSDAVRLQDQ LRLRANSLPG VLAAAAAAAL NPLGMAACGG 840 GAAGCPPGVM QLFQSGLEVT GGGAAAGLSN LPLPLQALQL LQLQQLQQLQ QLQQRLQQQQ 900 QRQQHVTAGT DGTSGAAAHL TGAHNNAPAP TTTASMGSTD PFVVGACASG SSSHRTCSAS 960 PPSAAAATLG TGASAQPAPL PLLPQAASAM LVAAAAAAAL QQQQLVHHPL GVPTSQCTAA 1020 LKSSVLKARA AAAAAAASCL QQQQPGTLLG IGGPLSLAAS AVAAAAAAAA ATAPPPTRMI 1080 PIDQGGVALP PSLMQQQRHI SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-25 | 48 | 148 | 7 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-25 | 48 | 148 | 7 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-25 | 48 | 148 | 7 | 104 | C-Myb DNA-Binding Domain |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 213 | 219 | GGRSGGG |
2 | 235 | 243 | RRPRKKHRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre03.g149201.t1.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3DVK6 | 0.0 | A0A2K3DVK6_CHLRE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP8667 | 4 | 4 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-26 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Cre03.g149201.t1.1 |