PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g149201.t1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 1103aa    MW: 109411 Da    PI: 7.6378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g149201.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.4e-114792346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        +W++ E +  ++av+ lG+    +W  +a+ ++ +R+++qc+++w++
  Cre03.g149201.t1.1 47 KWSAAEIDAVLKAVAALGSSdeiNWVEVAKSVP-TRSGNQCREKWRN 92
                        8********************************.***********98 PP

2Myb_DNA-binding28.73.1e-09100142145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +W+  E+ +  +++ q G+  W+ Iar ++ gR ++++k++++
  Cre03.g149201.t1.1 100 KEPWSSREEYIVCRVHCQVGNQ-WADIARFLP-GRAENSIKNHYN 142
                         679*****************99.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.3964094IPR017930Myb domain
SuperFamilySSF466898.59E-2143141IPR009057Homeodomain-like
SMARTSM007171.6E-114496IPR001005SANT/Myb domain
CDDcd001672.89E-104792No hitNo description
PfamPF002491.5E-114792IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1547101IPR009057Homeodomain-like
PROSITE profilePS5129416.295149IPR017930Myb domain
SMARTSM007176.8E-799147IPR001005SANT/Myb domain
PfamPF002492.5E-7100142IPR001005SANT/Myb domain
CDDcd001671.14E-4102145No hitNo description
Gene3DG3DSA:1.10.10.601.7E-15102148IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MTAASAKDDK GAVAAKDRAT AIAKQSSSGD MAGASGKKGK APKQSRKWSA AEIDAVLKAV  60
AALGSSDEIN WVEVAKSVPT RSGNQCREKW RNDLRPDISK EPWSSREEYI VCRVHCQVGN  120
QWADIARFLP GRAENSIKNH YNATLRSKAE AKGTSLLWVY GKQVLANGGC TSLELLNRAL  180
QMYADIPNVE PLESFAVDDE TLDIGGGGGS GGSGGRSGGG ALRPVARGGS LSGAGRRPRK  240
KHRRWGSGSS DETESGEDVL SSFSDSTDTE GGGRTSHRES AGARAAYVAA AAVAAAPCVL  300
ATDEAAAPLA PAVPASPAAG TLAAGGFPAP SPTPTPSGRH HVCAVRHGPA GRSPMAAARR  360
AADTAAVTTA TALPPDPFSG AWCDAGGGLC SPGGFGSHAS LGDDWLKHEG GELSPTALGF  420
HMSPRGAADV VRDFFGGPGP DAPQARKRSP TAGASPTVDA SSAGAGLGTA AGGMSRAGSG  480
LHRSRSASKT GAAAGMRLSL GVVAYSPTGR TSPPPPPVVV MSECDVFCMP PSYHPALDGS  540
SPHPLLGPVA PQQQPLQQQA QRHEGPAFAG QLPHLSPRGL CPAGQRGGAV SSAIQRGCSA  600
RQLQPQSNPA PLHALGAGPA RTASPPSHMA VEDTLMVAAS QGLDDFVADL GDLSDLGNIG  660
DCGGTCSAGA LRDTGDAGRA AGGRVAAGAS TLSMSSSDEA AGGALGAAAV TSAKVCAAAG  720
AAAASSCVSP PLLSPTERWH KSIFDEMGDG VELAELLADI HCDGAAAAAA LSIRPSSGGG  780
VEAAAVAEAA VGSGDGSGHD HSDAVRLQDQ LRLRANSLPG VLAAAAAAAL NPLGMAACGG  840
GAAGCPPGVM QLFQSGLEVT GGGAAAGLSN LPLPLQALQL LQLQQLQQLQ QLQQRLQQQQ  900
QRQQHVTAGT DGTSGAAAHL TGAHNNAPAP TTTASMGSTD PFVVGACASG SSSHRTCSAS  960
PPSAAAATLG TGASAQPAPL PLLPQAASAM LVAAAAAAAL QQQQLVHHPL GVPTSQCTAA  1020
LKSSVLKARA AAAAAAASCL QQQQPGTLLG IGGPLSLAAS AVAAAAAAAA ATAPPPTRMI  1080
PIDQGGVALP PSLMQQQRHI SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25481487104MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25481487104C-Myb DNA-Binding Domain
1msf_C3e-25481487104C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213219GGRSGGG
2235243RRPRKKHRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g149201.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DVK60.0A0A2K3DVK6_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP866744
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-26myb domain protein 98