PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre03.g144424.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family AP2
Protein Properties Length: 2735aa    MW: 268062 Da    PI: 6.7358
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre03.g144424.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.1e-15875945155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng.............krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y GV+++k++grW+A+I+d      +g             k ++ +lg+f tae Aa+a+++a+++++g
  Cre03.g144424.t1.1 875 SPYIGVSQYKRTGRWEAHIWDsGGGgvGGdasggagggggggKGRQLHLGSFPTAEAAARAYDRAALCMRG 945
                         6799*****************44446633778889999887555**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-11875954IPR016177DNA-binding domain
PROSITE profilePS5103216.476876953IPR001471AP2/ERF domain
SMARTSM003806.3E-24876959IPR001471AP2/ERF domain
PfamPF008471.7E-8877945IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-15877953IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2735 aa     Download sequence    Send to blast
MLDERGRGAP GQAFAPAPAE SRFASVPSSL HRGAFAPGPA QHMQHVGYAS QQLQQQQPQY  60
MDTGASEPPP MSAVPQAPPQ PQQLHGCQAW LDGSDPRQQQ QRQWAQQQWA WEQQEAAVAH  120
PDEQQQQPQQ QPLFREWLPR AASDSRLEAT AGPTGAHHDQ GPRGQGDSQS LGRAAGTYPG  180
PAVQGASGRP LGPPAGQPPP PAPPAAHLHT YHQHRYHRQS HQHSYQQPQE QEHDQQWYRS  240
TGGGYQAAAA APWGPGDRGP HPPGGTGGAS GGTGGTVAAM SGGSGDGSNG RHGSSSSSAS  300
GTTATGAAPD TASWGARGPP VHSAWAAAAS ASPYPQPQPQ PPQCRAPQQP RIPPLPLSEC  360
SGHEAMEWQQ QQHPPQHPLQ HQQAAGPWLP YGHPPHAPVP GSSALAATGR SHSSGPYGCR  420
QLTAAPSAFA SAFAAHAACA AVGVWESPPA RSSGARQQLP GDSGSGGGSG GGSGGGSGGG  480
SGGGSGGGNP PQPYDVPAQP QPHQVPPGAY YPSPQHTPSP YSSSALSSPP PPPQQQQPHM  540
PTPPHLPQMQ RGKYPSQELP RFCSPPQPPP PQQGYGPPPH HQHHQQHQPQ TPQQPHQPQQ  600
PPQPLLYGVQ YGAPPPSPPH GQQAGPYQQQ QQQQTQQQTQ MAAAAVGRPL LPPAPSSPAG  660
TYPYPYPYAY PYPHSHPHQP PQHPYPHHQA WPQPHQPHQP PTSMAGPPGG PPEPPPPQEQ  720
QQQWPSGDWQ QQQQQQQAQQ ASPQPPQPEP LNAGLAPSPP QSLSCRGKPR AKARARPTKA  780
AAGGGGSGSG EGALAVIPGQ PPQPQQQPQE QQTFGATGDS AAAMGVVGGD GGGAGAGADG  840
AGGGGGGGSG GGGGGGGGGP EGKRRNRSGP KSRSSPYIGV SQYKRTGRWE AHIWDSGGGG  900
VGGDASGGAG GGGGGGKGRQ LHLGSFPTAE AAARAYDRAA LCMRGPGAEI NCPLESYTHD  960
PVLAQLRQMP KRAMILAVRA TANTTDITGT ATGPGGASAG AGDGYGPLGG GAAQAGAATA  1020
ALAAAAAYAA AVMDAAAAPG ACAGAPSAAG CAPVGWGGQQ QQQQQQQQQQ QQQQQEWLDQ  1080
AASAACCMGG PGPSGHLGGP GHITAVVVKA EAEPEMECVG VGAWQPPEGE GDRRMSASPP  1140
PPPPPPPPLP PGLGGRVPSL LTSPAAQAAA GDAGEAAAAA AAAGLLQTPL QPQQQRQQQA  1200
DDVDMLLATP PQREPQLGPQ QPMQAAGGGC PPQLNQVSTS AFDAGTAAAG TAELRTGAAA  1260
THDAARHDAY RCQQQYWQHP HQFPAGHVRA VTATRAASGP PQFWSQQAQP PTHVGPPPGG  1320
AAAVQLQPQA QQLQPNQLQP QLRRSHHHRA AAAATPGSTG ARHRRCSAGP AAAAAATSLS  1380
GSSPVSAAAA AAAAPAALVA AVAAASHGSS HGSPRSPPAT HHGGVRKHRA GGGAASGVTS  1440
SSPNSVSGNA AAAGASPLAA GAATAHGNAR RGAAAATGVS CALATGLADE RAAAGAGGGG  1500
GGFEGDDAAR GMVTVAGLPV PPTAATAAAS MGAGAWGAAY TPPSSPAGVP PLAVVPGRAV  1560
GQLPPGRAYS GAAGAAAAVE ARPAPAAAAP GQAAEEEAAQ QPAAGPQPHW PPPEQQQQRA  1620
HPSQWCWPHT PVVATGVEAA APAAAAATAA TAAAWGAQPC AVGPYGGGGV GAAAGSPQHT  1680
AAAATADADA SMVMTRAESF SGPMQPPPYM QQQQQEQHQH QQQQQYAAAC PWLYTSSVPP  1740
YGQAAAEAPP PQLGAVSASP HAPAAAAAAA AAQAGAAAAA AAAAVSPLRR LNLNPAASAP  1800
LPLPPFDVAA AAAAASGPAS TSRAATGAPA AGSPYLLVYG QAAVTAAAAA PAQAAGASVQ  1860
PGQYQQQWGP VAGGFWPHSS AADATPPPAF ALGPGPGEAM AMEWGTTPAV DRAAAYLAQT  1920
PAAAAGTTAA GNSAAPHHLQ QQAAAGAAAA AAAAAAATAS SCLSAGLAAH TTLDWPPPQQ  1980
LLQPPPQQLL QPPPPLAAVA DSAAMVTGGS PCGALAGRAG LHQHIGTGAM TGGPPQQQEQ  2040
QIRVAGRAES APHPLTMLPG AEVALVMPVP SAAAGAVVGQ QEWAVAATAT AATSFPRTAL  2100
PAGSPPPPPV PRHWSHATAG AAAAPPAATC VSGMGAAWGG LGAGAAAGTL SGGVGGGVGG  2160
SPASQLPNMP SPDGAPREPL PPPPSAGAWQ QAFTVAAGAS PAGAQPPPAT PSPTQPCLQP  2220
YQLQSPYPQH QQRPPQPTAQ QHPPPQLPLP YLSAVSGPTP SVDMAAAAAA ALDATHAANA  2280
NAAIAAGSAF PAAAASFPAA AAAASFPAAT AAVAAAVAAA AAPAGEKAPM PSRASVSLGA  2340
LMEAWLHSED SGGGAGAGAG GAGGAGGAGG AGGGAGGTAG CAQQGVDAPA AAAAAMELQL  2400
QQQQQAASVE AAGGEVPGSG GSDGCGGGGG DAGSLLGTRQ SSSLSSLGGD EDMEALERSC  2460
GLVLDLGLGL GLEEGAPGGC GGGGEFTDDA GGGVGCGVIS AMAVGGSEMM MGVDTAGGAG  2520
AGGAAEAMAG VEALPATGLA AAAAGAAAAG TQSQLALPPP QCVAASGERP PGPQQEEAMD  2580
VDALAAVPAV QQQQYQQVPE GFPAGRPPVL PAPPASPFGT VRGLMGAAAA AVAAGSAYYG  2640
GLPCGGSTGG QEQCWPAVVA TAAAAGGVDA SPMAAALAAH RQRQAAAAQP QQSPPQPPPM  2700
QQQQHPYSQP PSLGLIALQQ LPSLPDFGSL DSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472484SGGGSGGGSGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre03.g144424.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DV710.0A0A2K3DV71_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP575168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.13e-10target of early activation tagged (EAT) 2