PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre02.g146629.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB_related
Protein Properties Length: 1282aa    MW: 127941 Da    PI: 7.9346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre02.g146629.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-075793442
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42
                        W +e  e+l++ ++++G++ W++ a+ ++ gR++ ++k+
  Cre02.g146629.t1.1 57 WNEEALEQLARIHAEHGSK-WTLLASQFP-GRSDSDVKN 93
                        999999*************.*********.********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.35849103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-951102IPR009057Homeodomain-like
SuperFamilySSF466893.76E-852105IPR009057Homeodomain-like
SMARTSM007176.7E-453101IPR001005SANT/Myb domain
PfamPF002492.4E-65693IPR001005SANT/Myb domain
CDDcd001679.29E-55793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1282 aa     Download sequence    Send to blast
MSSESASVSA EEDGTRSDAS CVPSTSGDDS DAGPIHRKKV NKSGRRLGRA RMQRRLWNEE  60
ALEQLARIHA EHGSKWTLLA SQFPGRSDSD VKNIFHSAMR SKSYKGRCLL RAYAQAVVGH  120
ADDPDARQAA LEAAEKLRDE AIAAAAAAAA AAAATKAQAA ADNAAVQQGS AARAPTAGKG  180
AQSAGAGGKS GAAGTAARTG SSASLVAGGC RATAAAPPAA ATPDSQLAQG LLPGATGALP  240
WAEGIAAEVQ LRACTAAAAP LQQPAGSSGA AGALGGRTPS GRRRLRPPEV HVQSASEQQP  300
TQPQGHTAGH LHPGGYGASY SRAGLAGSAQ AYAGPAGTTE GTDRGGPSTS ADGSASRHDF  360
GGASAGAYLP TDGAENGSRK VRIRVAGGSA ASAAWGTAGL VSTAARRIAA PVVPTAASAQ  420
LGVLPSSGTS SVQQTPPGGP ARFSDPGLTT SRLFGRSDDG TAGTAAPAAY LSAVGTAAAP  480
AAGKLVGKRA SDSAAAYPTF SYPRQQLHSA AGAADREPVS AADGGLLLLG LGSPAARSAA  540
QQQAGNGGAS NRWRPYSLSN TPLVSGSRTA PLIAAATWQL QSQQQSAQAR EQQQQQQLQH  600
SPWQLHSVAQ QQPCSSGAAD AVAAVPPFIT RASCSSAVVS GSNGVLMASP PPYFRSGSSG  660
RLGMSGLLVM LDAYQPSGTA APADNPEAML EAYRDAAWLN PPAAGTHAAA TGAAAAGAAE  720
RPVGGATQQP HVGTQLELLA GARAAGFGPP LQLSPQPAAS SGTWQRHGTP HQQQQQQEPL  780
SLQQRQHQQQ EQHTMHIYHD GDPQPTWLAT QPSHAQQQHT TSAPSLIAMI GSVEPAPSYL  840
QGGGTHAQRH RPLQQQPQDQ LPPPMLSHPQ NQPDRQQQWT GGTAVALHGS GAAATDQLHS  900
GSLVSVTGSG AIATWARSSL EYLEAGSASS ASLLAGVMGG GGSPRSGNYA SYLTTDSEPP  960
RGVPGGGGFS SAVGRVGMRS TSGSGQNHVQ PHVMASCGAT AMFAAGGSVF SGGATATGAV  1020
RRESGFGNPA APQPLSLRRC STQPSPPEVF PAAAAAVRSL LQTSVASAPA SAAFGHAPAG  1080
GSGSAVHQSS MASLCEDPAS AVTQQPSQPT PNVGITAAGD LGMGSGGPRA AVAVLVASAG  1140
AAETCCRLHQ PSPRAHTIAE HATAPELGTN GMDVWTGRAT SEDMEYGNGG ATRGSHGARA  1200
ATPQLLRASA AGDADVDGQQ GAAGGEAWVR AGGSEVAFAD QPGWAELCGD LSRFAGGMDG  1260
GGRDGSNCDI VMHDSACGGE G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre02.g146629.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3E3P90.0A0A2K3E3P9_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.16e-07myb domain protein 63