PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre02.g110550.t1.1

Common Name

CHLREDRAFT_141724

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 772aa MW: 79945.7 Da PI: 6.8708

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre02.g110550.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.7	4.2e-11	17	60	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +W+++E+ llv+ ++qlG+ W I++ ++ gRt+ ++k+ +++ Cre02.g110550.t1.1 17 RPPWSAQEERLLVEKHAQLGNA-WMEISEFLP-GRTAGEVKNIYHS 60 789*****************.*****.******97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.454	12	66	IPR017930	Myb domain
SuperFamily	SSF46689	2.92E-11	15	63	IPR009057	Homeodomain-like
SMART	SM00717	9.1E-9	16	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-9	17	59	IPR001005	SANT/Myb domain
CDD	cd00167	8.67E-7	19	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-12	19	63	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MELRAGPDRA IIRRRRRPPW SAQEERLLVE KHAQLGNAWM EISEFLPGRT AGEVKNIYHS 60 TLRASRDPGR SLLRSYCMQI HGREADAKLR REALRSAMRA MAPQGAVASK ALRQAADGLE 120 YGEADDEPGA NVAAAATMRL PCLLDAGVVD AMLASRDAGL AQLRLLAAAT GGDDWESDEG 180 SGGGGGVAVC PGHIDAGAAG TVYDRLPRLL CAGLGSGAAP PQAGMKRAAP AAVETQLQHS 240 PSTGSGDASE MPAEDIKRAR MALLPDGADP DVGLGRLSSG GQQAHERLLG AASLRDGNTR 300 LQTLDLSGGG AGPGAAAHRL LAQQLQVLQQ AHHAQQLQQQ LREMQQGQGQ SLQLPDAALL 360 QLLGGEVQAR SRAPLDSLQA MVDGTAQAAA AGQTDNAPTD NPEATPAASA GAGSGPRNTR 420 GRNGGGCISQ NADPTGPAAM PSTQQRQQQK QQQANGVPTT TAPRSPAAVT PMGGGTGAAS 480 ASAAANALAL APAHMEASLK VALSHARDSA GTASATAVGS GHDNGRGVAS NRGASGPGTS 540 AWEAEQRHRM DRMLSYGISL DEIEEELLRR RQAKLAAEAA ALGEAAAALA AGRRDVVSPA 600 AVAPAQATVP LALPQVPKND TGAGTEQQLK LEEQQNLLQR LQALQSQPQL PIKADPDEPM 660 ALDAQALRRQ LLLELLKQQA GRQQQQLPVL HHHQHLTREE QQQLCVEGML RLNTYAPAGA 720 GRGLPDLTLQ AAPATALCGS VGMQASLPLG APRGVGDLDA WLRSAAPDMW S*

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MELRAGPDRA IIRRRRRPPW SAQEERLLVE KHAQLGNAWM EISEFLPGRT AGEVKNIYHS  60
TLRASRDPGR SLLRSYCMQI HGREADAKLR REALRSAMRA MAPQGAVASK ALRQAADGLE  120
YGEADDEPGA NVAAAATMRL PCLLDAGVVD AMLASRDAGL AQLRLLAAAT GGDDWESDEG  180
SGGGGGVAVC PGHIDAGAAG TVYDRLPRLL CAGLGSGAAP PQAGMKRAAP AAVETQLQHS  240
PSTGSGDASE MPAEDIKRAR MALLPDGADP DVGLGRLSSG GQQAHERLLG AASLRDGNTR  300
LQTLDLSGGG AGPGAAAHRL LAQQLQVLQQ AHHAQQLQQQ LREMQQGQGQ SLQLPDAALL  360
QLLGGEVQAR SRAPLDSLQA MVDGTAQAAA AGQTDNAPTD NPEATPAASA GAGSGPRNTR  420
GRNGGGCISQ NADPTGPAAM PSTQQRQQQK QQQANGVPTT TAPRSPAAVT PMGGGTGAAS  480
ASAAANALAL APAHMEASLK VALSHARDSA GTASATAVGS GHDNGRGVAS NRGASGPGTS  540
AWEAEQRHRM DRMLSYGISL DEIEEELLRR RQAKLAAEAA ALGEAAAALA AGRRDVVSPA  600
AVAPAQATVP LALPQVPKND TGAGTEQQLK LEEQQNLLQR LQALQSQPQL PIKADPDEPM  660
ALDAQALRRQ LLLELLKQQA GRQQQQLPVL HHHQHLTREE QQQLCVEGML RLNTYAPAGA  720
GRGLPDLTLQ AAPATALCGS VGMQASLPLG APRGVGDLDA WLRSAAPDMW S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre02.g110550.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001699705.1	0.0	predicted protein
TrEMBL	A0A2K3E2Y4	0.0	A0A2K3E2Y4_CHLRE; Uncharacterized protein
STRING	EDP07401	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7765	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	1e-10	myb domain protein 119

Link Out ? help Back to Top
Phytozome	Cre02.g110550.t1.1
Entrez Gene	5725256

Publications ? help Back to Top
Merchant SS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 2007. 318(5848): p. 245-50 [PMID:17932292]