PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre02.g109650.t1.1

Common Name

CHLREDRAFT_186803, GSP1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

HB-other

Protein Properties

Length: 1028aa MW: 105830 Da PI: 6.9805

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre02.g109650.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.6	1.6e-06	861	894	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +++ps++e+e LA+ +g +++qV+ WF N Ra++ Cre02.g109650.t1.1 861 HPHPSRSEKESLAAYTGKSTKQVTDWFTNWRARH 894 799*****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.6E-5	841	901	IPR001356	Homeobox domain
Pfam	PF05920	3.2E-11	854	893	IPR008422	Homeobox KN domain
Gene3D	G3DSA:1.10.10.60	1.9E-13	854	900	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.95E-10	856	902	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.815	861	897	IPR001356	Homeobox domain
CDD	cd00086	5.51E-9	861	897	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1028 aa Download sequence Send to blast
MDNRQPQFAD AQAMDGAAVW RSSGTGYEWI AQALQDADDS MAGFAEASAM GLGSFTEGLG 60 PGRGGADPGG DPALAPLQSA QLMGHLSITE AERAIAEAAA MMAAGTVYPE ATPSGQPPTH 120 PHQQPQPRMH AGTYPAQHQH QHQHQHQQHH QQHQHVVPAA VGHSHHQAAT AAAAHAPHYH 180 QPQHPHHQQY QQQQHVHHQQ HPLMPDPYTS FAAGPIDLAA HAHMQHRQQH QQEQQQMLYA 240 YHQHNQYHHQ QQHLQPQHQQ YQQYPPQLPH QQVQHQHQHT ALGSPPVQHH QHHQHHQHHH 300 QHHQHHHQHH HQQHVPAGAH HAAARPLPPN HQSHQHHQQQ MPPVVPSQPQ HHQHGMHAAA 360 AAASSSAVSA AASARGGYTA IAPAAPPATA HSALAPPVTS TYYQTSGGAM PYPGWSVAGL 420 EVPTPGTRSQ RGSSTHLLTA PGLHPTSGGS GGGEGREVVM HPGFGAAALT GATGAAAAAA 480 AAPTPQASPL GGRGTGASAE PATSAHSHGG GGGFGNVVSG TPMEVSSHAG GRGASGSTDS 540 SAEASTDHKR ARTNNPGAGG ARAAQAAALP SLDAVTSQQA AAAAGMAPAA GTLGAVPPAY 600 PAVAVAPAAE VNGAMPYVDA LTEQLRAVRL LQPTPPSSAS PAPVRASAAA MADVTENVAV 660 KAKGKKKGAA AAAAAQPPPP PLLPPAPRTE MDRRAALSGA AGAFMAACDE AVRELLLAMN 720 FSDHDAEAII TGAAPPQLEH AASGVVSLVL RLKSSVLSHY IKHLNNAAAR SQAAAASTAA 780 VDGNAEDAAD KHGAKATSAA KAPPAAGGGA GDAADQQLST GEACLVQLQL YGGVGDALLQ 840 LLRSKLRGSA CQLWALAHIV HPHPSRSEKE SLAAYTGKST KQVTDWFTNW RARHWRPAIM 900 ALQKGAAGGA AGGSLGVAAD GAASGGDDGE EEECAEARAK KGKGAKDCSR AKEPASGARK 960 AAAAAPATTA AAAGAEVGSG GRSGSRRPRS RRACRETESE EDQEDDDDEE EDEEESSPSE 1020 GGSTDDE*

Sequence ? help Back to Top

Protein Sequence Length: 1028 aa Download sequence Send to blast

MDNRQPQFAD AQAMDGAAVW RSSGTGYEWI AQALQDADDS MAGFAEASAM GLGSFTEGLG  60
PGRGGADPGG DPALAPLQSA QLMGHLSITE AERAIAEAAA MMAAGTVYPE ATPSGQPPTH  120
PHQQPQPRMH AGTYPAQHQH QHQHQHQQHH QQHQHVVPAA VGHSHHQAAT AAAAHAPHYH  180
QPQHPHHQQY QQQQHVHHQQ HPLMPDPYTS FAAGPIDLAA HAHMQHRQQH QQEQQQMLYA  240
YHQHNQYHHQ QQHLQPQHQQ YQQYPPQLPH QQVQHQHQHT ALGSPPVQHH QHHQHHQHHH  300
QHHQHHHQHH HQQHVPAGAH HAAARPLPPN HQSHQHHQQQ MPPVVPSQPQ HHQHGMHAAA  360
AAASSSAVSA AASARGGYTA IAPAAPPATA HSALAPPVTS TYYQTSGGAM PYPGWSVAGL  420
EVPTPGTRSQ RGSSTHLLTA PGLHPTSGGS GGGEGREVVM HPGFGAAALT GATGAAAAAA  480
AAPTPQASPL GGRGTGASAE PATSAHSHGG GGGFGNVVSG TPMEVSSHAG GRGASGSTDS  540
SAEASTDHKR ARTNNPGAGG ARAAQAAALP SLDAVTSQQA AAAAGMAPAA GTLGAVPPAY  600
PAVAVAPAAE VNGAMPYVDA LTEQLRAVRL LQPTPPSSAS PAPVRASAAA MADVTENVAV  660
KAKGKKKGAA AAAAAQPPPP PLLPPAPRTE MDRRAALSGA AGAFMAACDE AVRELLLAMN  720
FSDHDAEAII TGAAPPQLEH AASGVVSLVL RLKSSVLSHY IKHLNNAAAR SQAAAASTAA  780
VDGNAEDAAD KHGAKATSAA KAPPAAGGGA GDAADQQLST GEACLVQLQL YGGVGDALLQ  840
LLRSKLRGSA CQLWALAHIV HPHPSRSEKE SLAAYTGKST KQVTDWFTNW RARHWRPAIM  900
ALQKGAAGGA AGGSLGVAAD GAASGGDDGE EEECAEARAK KGKGAKDCSR AKEPASGARK  960
AAAAAPATTA AAAGAEVGSG GRSGSRRPRS RRACRETESE EDQEDDDDEE EDEEESSPSE  1020
GGSTDDE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Cre.5904	0.0	normal conditions

Function -- GeneRIF ? help Back to Top
Gsm1/Gsp1 dyads share sequence homology with and are functionally related to KNOX/BELL dyads regulating stem-cell (meristem) specification in land plants. [PMID: 18510927] the importance of Gsp1 in mediating the zygotic program, including the uniparental inheritance of the chloroplast DNA and mitochondrial DNA [PMID: 22715041]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre02.g109650.t1.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF108140	0.0	AF108140.3 Chlamydomonas reinhardtii gamete-specific homeodomain protein GSP1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001699946.1	0.0	gamete-specific transcription factor
TrEMBL	A0A2K3E2X0	0.0	A0A2K3E2X0_CHLRE; Uncharacterized protein
STRING	EDP07642	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9879	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19700.3	4e-10	BEL1-like homeodomain 10

Link Out ? help Back to Top
Phytozome	Cre02.g109650.t1.1
Entrez Gene	5725497

Publications ? help Back to Top
Merchant SS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science, 2007. 318(5848): p. 245-50 [PMID:17932292] Lee JH,Lin H,Joo S,Goodenough U Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family. Cell, 2008. 133(5): p. 829-40 [PMID:18510927] Nishimura Y,Shikanai T,Nakamura S,Kawai-Yamada M,Uchimiya H Gsp1 triggers the sexual developmental program including inheritance of chloroplast DNA and mitochondrial DNA in Chlamydomonas reinhardtii. Plant Cell, 2012. 24(6): p. 2401-14 [PMID:22715041]