PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre02.g108350.t1.2
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 1379aa    MW: 136134 Da    PI: 9.7738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre02.g108350.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-1661103346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +W++eEd+ll  +v ++G + W+ Ia+ ++ gRt+k+c++rw +
  Cre02.g108350.t1.2  61 AWSKEEDDLLRALVDRHGANKWTEIAASLP-GRTGKSCRLRWVN 103
                         7*****************************.***********88 PP
2Myb_DNA-binding51.62.2e-16112156248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g++++ Ed+++v++ + lG++ W++Ia++++ gRt++++k+rw++yl
  Cre02.g108350.t1.2 112 GAFSPAEDQRIVELQATLGNR-WSAIAKELP-GRTDNMIKNRWNSYL 156
                         79*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.66354105IPR017930Myb domain
SuperFamilySSF466895.24E-2857152IPR009057Homeodomain-like
SMARTSM007178.1E-1458107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2261112IPR009057Homeodomain-like
CDDcd001673.14E-1461103No hitNo description
PfamPF002492.9E-1561104IPR001005SANT/Myb domain
PROSITE profilePS5129423.62106160IPR017930Myb domain
SMARTSM007176.4E-15110158IPR001005SANT/Myb domain
PfamPF002493.6E-15112156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-22113160IPR009057Homeodomain-like
CDDcd001672.07E-11113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1379 aa     Download sequence    Send to blast
MDKDYDREAS PTLSTTDTGS SDEEDAAHEA TSRRKRGGGS RARREGSASL GDPQSRTPYK  60
AWSKEEDDLL RALVDRHGAN KWTEIAASLP GRTGKSCRLR WVNQLRGDLV MGAFSPAEDQ  120
RIVELQATLG NRWSAIAKEL PGRTDNMIKN RWNSYLKRRL EMGRAIAISL GLGLGLAPHD  180
PTSPAAANAA AAAAAAAAAA AAAAAQPGAP ADAAAVLQHQ QHQQQLMLQS AAVVAAAAAS  240
TPPSSMPRRR RSGDGWATAT SEGRERQRRS MEKSQRGRTA GAAPATPTVT ASGGASGGTI  300
SSGMAGAGSG GRGSRRSNSR GRGSGTNARV AGTSGSAGLA QPAATTTSPA ASHDVPVGLV  360
SSASTPHAGL PANVPAIGVA PAAAAATPWG PGAARPAPSL APPAAPLSAA GIAPGPVLPV  420
MMMNPGPATG LQPAAASTTF TFGLGAGGHA AAIAAASAPA APTNTAMECT VMRQSSSGAG  480
PTSAGPAGAQ KAAAPPSAEQ ERPRSAAMAA DGAMGGVSGV VSAAADAAAA TARDAQRLLT  540
LQQYFMKSMA AEQAAVAAAA ALKLFNQTVV GGDAAPPPGP RPVPPRPLSE LPTAAQSAAA  600
SDTPWRASAP GARSPPAGTG TGTSTGAASA GPATGALERT DSASKRLRLE PVAEARDSAG  660
SGSGSGSGEL QSPTQHDQQQ SRRDRDRDRD RDRDRDRDRP SGRDRERRRE RDADIGSRRR  720
RRQAPRDGNE MSDGGDSADS LGSRRAAAAR AGGGSARNSM DRRRDGGRQD PAAAAAAATA  780
AGVIAAGSSP SRTTADGFHM SDLLLASPIR DQRTMDDMIL PGSSPDEHTH TRAHAHARHN  840
GAAGAAGGVR SAPGSAVAIR RSGSGDGRPS SDGLGAMAAA LAHSSGSGGS GGLAQSNSMF  900
GSWGLLSSAA AAQQQAAAAA GPGSFGTGAA ASAGPVAHPL HFPPQLATSQ TQSMQPMQPV  960
PSLQPMPSLQ SMPSMQLMAA TQQPMQVSMQ AMPGSNPAAH DAAAAAAAAA PPSMSSLATA  1020
GSTAEMLMTL GLGVVAHLSG PQAAAQLGAA AVVQPGAGGG MAGAAPGGGM DLSSAAFGAL  1080
QRMYVSQLMA QQPQPLQQHM MVAAAVAGMP QMAAPVAGLM GMPGMAMPML APVVPAAGAQ  1140
GSAGAAGAAV AMQWEAHAHA HAQQLQAAQA SMAWGPIAAA AVPSAATATP LHALAAAVPL  1200
SQAQLHAASA ASAAAAGAAQ AHHAQHAGGA TAAGTHAACD PEALDCISLG GMLLADHPLH  1260
GIPTPAELSP LTGSMSDLAA AAGPDGDFTS RHMPHHAYTH GHAGHGQEPC AANSGVAGAA  1320
GAAGGGGAAG AAAGGSAWHL DGMMDRSHLP WGNLDTFCSP TPGSAQAKHD GDDAGHHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-286216110109B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262270GRERQRRSM
2688698RDRDRDRDRDR
3706721RRRERDADIGSRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre02.g108350.t1.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3E2T60.0A0A2K3E2T6_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1394022
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.19e-35myb domain protein 1