PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre02.g103450.t1.1
Common NameCHLREDRAFT_205725
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 764aa    MW: 76757.4 Da    PI: 10.5995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre02.g103450.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-15650348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         WT +Ede l ++vk++G++ W+ Ia+++  ++  kqc+ rw +yl
  Cre02.g103450.t1.1  6 TWTDQEDETLRKLVKEYGPKKWSVIAQKLK-TKGSKQCRRRWKNYL 50
                        6****************************9.*************97 PP
2Myb_DNA-binding49.78.4e-165797244
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                        g WT+eEd +l ++++++G++ W+ Ia+++g gRt++ +k+r+
  Cre02.g103450.t1.1 57 GGWTAEEDRILMEGHRLYGNK-WTEIAKMVG-GRTDNAVKNRY 97
                        67*******************.*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.575154IPR017930Myb domain
SMARTSM007177.5E-14352IPR001005SANT/Myb domain
CDDcd001676.85E-15650No hitNo description
SuperFamilySSF466894.12E-27697IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-20655IPR009057Homeodomain-like
PfamPF139211.5E-16764No hitNo description
PROSITE profilePS5129418.05855105IPR017930Myb domain
SMARTSM007172.2E-1555103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2156105IPR009057Homeodomain-like
CDDcd001672.44E-125997No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MPLTATWTDQ EDETLRKLVK EYGPKKWSVI AQKLKTKGSK QCRRRWKNYL NADLKSGGWT  60
AEEDRILMEG HRLYGNKWTE IAKMVGGRTD NAVKNRYAAL CKRDMRGGGN VRRAAAIGGG  120
GGGGGGGARG GRKARPANSD SDNVSDVELD DDSDAEDEAK RSSSFSSDRS REPSPSRGSK  180
GSRGGAAEGS TRSPATRGSV GGAVSPRAAA GGSGGARAGS ILGPRRRSAA AASTEESPPP  240
QAEPDEAPAA KRRALMNGGA AAGGVLANGS MNGNGYQLPV PTPRTPRTPR LLAQLQEATL  300
ANNLHQHQQH AAVAASRAGA GAGRGLVGSG GKVGAPPKKP PALTINIPNP SAADPMAQPP  360
PTGSGAGYGI EIRVLRDLLT PQEIQYAREL NDMQLPLHIN VDDDPLMVIG TGLHPPGGVS  420
AGGLPTTAGV LGGGGGAAGA SGLSTGSLSH GEAPMTTGRH AAHHALNALV SPGSAGGALA  480
DFNDVLRWFQ TGLTPKSTYG GSAGGLGTLG GTPRNMLGSL GRTGLTPRGL HTSTGRGGHD  540
SDGGGLGMGT GLTPRGLRGA GGGGGGGSPS SGSGSGTPPS AERLGPNGAA LAGTPSMRTR  600
RQIAVAAAVA ASAGPGPSST SHAQQQQGGP QGAFAGAELH AGHRQLLTKL IQNAAVPSET  660
PKPGAAGDSG NTILSARGDL RVIPPPSPGV FSPGSFLATS RGPATRSAAA QQEQQQQTAE  720
LQQAGSGSVV VMPQFTQQEL LMLLEVLHSD DLQALPPPPE AFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-3411031103C-Myb DNA-Binding Domain
1msf_C3e-3411031103C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.159090.0normal conditions
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre02.g103450.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001699782.10.0myb family transcription factor, partial
TrEMBLA0A2K3E2F10.0A0A2K3E2F1_CHLRE; Uncharacterized protein
STRINGEDP074780.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.12e-36myb domain protein 88
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]