PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre02.g091550.t1.2 | ||||||||
Common Name | CHLREDRAFT_186648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | Whirly | ||||||||
Protein Properties | Length: 239aa MW: 24873.3 Da PI: 10.1021 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 68.9 | 9e-22 | 80 | 222 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanata.............erkydWekkqsfalsatevaelvd...laskescef 76 vykt+aa+ + ptf + ++g+ +l+r+G++lle+a a a +r+y+W++k +fals+ e+++++ +as + + Cre02.g091550.t1.2 80 VYKTRAAMCLRLLPPTFAKAQAGK-VLERDGTMLLEFATANAaapgagsgpagnvNRTYNWGNKVTFALSPVELGNILAgdaVASDKGLVL 169 8*****************998776.79**********8664322333344444445*******************9874458999999*** PP Whirly 77 fhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 +hdpa+ +++G+ k l+++ lpdG f nl+ g e+fsvPv+k+ef v++s+ Cre02.g091550.t1.2 170 WHDPAKL-GKTGEPIKKLSLKQLPDGNISF-NLT------AGPENFSVPVTKGEFEVIKSV 222 ****865.578888899*********7443.444......56889*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 7.4E-51 | 68 | 238 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.43E-19 | 71 | 236 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.2E-40 | 80 | 222 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MLLSRLAHSA LPASLRASAA SSASSQLHAV PRVASAAPRA PSHVAQYSNG SAAPVPPNFA 60 APNDRAATSS SDRVYTNYYV YKTRAAMCLR LLPPTFAKAQ AGKVLERDGT MLLEFATANA 120 AAPGAGSGPA GNVNRTYNWG NKVTFALSPV ELGNILAGDA VASDKGLVLW HDPAKLGKTG 180 EPIKKLSLKQ LPDGNISFNL TAGPENFSVP VTKGEFEVIK SVAQFAIPRL LGFDAVFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koq_A | 1e-18 | 67 | 235 | 2 | 163 | Single-stranded DNA-binding protein WHY3, chloroplastic |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Cre.13809 | 0.0 | normal conditions| nutrient deficiency |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre02.g091550.t1.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC057389 | 0.0 | LC057389.1 Chlamydomonas reinhardtii gene for hypothetical protein, complete cds, strain: CreWhirly. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001701785.1 | 1e-172 | transcription factor | ||||
TrEMBL | A8I9A1 | 1e-171 | A8I9A1_CHLRE; Transcription factor | ||||
STRING | EDP06760 | 1e-172 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2026 | 15 | 16 | Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 4e-19 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Cre02.g091550.t1.2 |
Entrez Gene | 5727487 |
Publications ? help Back to Top | |||
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