PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre02.g085150.t2.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

SBP

Protein Properties

Length: 1529aa MW: 152971 Da PI: 5.5268

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre02.g085150.t2.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	41.1	4.7e-13	2	48	29	75
T-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 29 kapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 k+ + ++g++ rfCqqC++fh ++efD + r Cr+ L +rr Cre02.g085150.t2.1 2 KSMSLSIEGRSCRFCQQCGKFHLVEEFDGANRNCRKALMIRFYKRRN 48 566778999****************************9877666664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.8E-13	1	36	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	14.024	1	49	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-11	2	47	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-11	5	50	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.60.10	4.2E-4	696	753	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1529 aa Download sequence Send to blast
MKSMSLSIEG RSCRFCQQCG KFHLVEEFDG ANRNCRKALM IRFYKRRNMP LGGMQASLER 60 NDPAAGMGDP VEVRVEPRKR GRPRAPRPNI TEDDPGAAAL AAGGGLPPPG LVGSNAAARA 120 AAAAGFDSGL QAAYIAASRG YQGSSGVGVT PATAIGPPGY SQGGVRMAGI QVQSGNYDNN 180 NNNDGDDDSD AAPPRQRRSK GASAARRASP GSSGAAGSGG LDLNGGQQLD GLNALGGGLP 240 PLGDGLSGAG LGAGSFDVLG GGGPLEGLPG LPGRTHGGGL GWRSGALGSA GHQVGGLGLV 300 DGGLGLGGGG GLRLGDLGLP LPLPGIGGGR GGGAGLGALS GLGLRGGGLL DAAGHGVGGA 360 GAGGLLLDAL GGAGRLLAQA GQPMRLVLQP QLDGSRRGGG SGNQSVGCSS SHSQHEQLQD 420 DSSGLVGPLS RAAGATRGVG LVGQQQQQGA TSRDAAAEAL AALAASGQLD VQMLLAAVAA 480 SGGTASEQQA VLVALLAKLP GGAELLGSAG LQPRQEQDLE AGNPERPLPA GLQRLAGRDG 540 LGGGRAGLLP LALAQDHEGV GNLGMGRLSN GTGGGGGRPL PALDVSGAVR PLGGGLGGLG 600 RGRSVGLDMG AVGAAAAAGG GSGGSGRPAV TPLGTGLLGT ARGRNANPDM DFPLRLDDGL 660 PATLVGIGRL AAPGAGDGAG PLAEDDVCAG GGGMGELSLA DLLGQMSIPQ QLELLMGLPQ 720 QQMTEVLKQL PHTQQVELLL ALQEDRQNRV MAERQQQQQQ QQQPQQQQQQ QQQRQQQRQI 780 GAGGPQPQVL MLGAQGLRAA EIGGSGGGLG PRALKLDPED VPGRVGLLES LAAGARLNLA 840 PLGRAAGARG GALEGTEDEK AGLTRLQHQV SGKGFGAAHA AAQSLAAGTA YAAAGEASNM 900 QTTPGRLQPP PDGADRRGNS GEAVKLEVPE RAAKAFNSAK ASSSPGNTAS GATEQQQRQP 960 AVKQQEEEQP QSEGNNAAGE ASGRGGDRDG GNTGGAALDG CGDAAAAANT AEVAAAGDAA 1020 DVADAAHDAA YSCEEALERL SLKLHGVRPD ELAPDVAQRM HKWLESMDAV TLQGTLRSGC 1080 VNLVFDVSYR QPPAATDAAT RSTLTTSDAA GHRRAWAYRL AAAAIASSLG LELPAPFAAG 1140 GGRQRGDEAT EGGQWCGLCL QAAALAAARG IRVQVQVGNA VVYPPHAKQT PLAEQQQPAT 1200 AEVHELAPLA IVQGDHHAVA IMSGRGLNDP SARLHVRLNG RRLGALVQPQ QEQQLPPTDA 1260 DSKTGAVCSA AAGNYPMQGP SAQEQEQQRC GEECALVFLD APGQAGLAVL EWEAGGGAGV 1320 LGDWWPLVVA PDAQVAAEVN ALALNSDIAS GRGTEWLRRL LVDVGLVIDA AHNSPAGGLH 1380 AGLEPGVLER LVCRARCVVP FCEARMMPHT AAVARAFLAA AAAETETEAD AGIAAVSKLP 1440 SRASWSLSSS ACGSDFDYSD SEQKQEDHMD SSAGDATSPG TGQCSRSGVC KCPDSPCAGC 1500 FCYNTDGVKL ECCPPRPGIA ETGSAHAR*

Sequence ? help Back to Top

Protein Sequence Length: 1529 aa Download sequence Send to blast

MKSMSLSIEG RSCRFCQQCG KFHLVEEFDG ANRNCRKALM IRFYKRRNMP LGGMQASLER  60
NDPAAGMGDP VEVRVEPRKR GRPRAPRPNI TEDDPGAAAL AAGGGLPPPG LVGSNAAARA  120
AAAAGFDSGL QAAYIAASRG YQGSSGVGVT PATAIGPPGY SQGGVRMAGI QVQSGNYDNN  180
NNNDGDDDSD AAPPRQRRSK GASAARRASP GSSGAAGSGG LDLNGGQQLD GLNALGGGLP  240
PLGDGLSGAG LGAGSFDVLG GGGPLEGLPG LPGRTHGGGL GWRSGALGSA GHQVGGLGLV  300
DGGLGLGGGG GLRLGDLGLP LPLPGIGGGR GGGAGLGALS GLGLRGGGLL DAAGHGVGGA  360
GAGGLLLDAL GGAGRLLAQA GQPMRLVLQP QLDGSRRGGG SGNQSVGCSS SHSQHEQLQD  420
DSSGLVGPLS RAAGATRGVG LVGQQQQQGA TSRDAAAEAL AALAASGQLD VQMLLAAVAA  480
SGGTASEQQA VLVALLAKLP GGAELLGSAG LQPRQEQDLE AGNPERPLPA GLQRLAGRDG  540
LGGGRAGLLP LALAQDHEGV GNLGMGRLSN GTGGGGGRPL PALDVSGAVR PLGGGLGGLG  600
RGRSVGLDMG AVGAAAAAGG GSGGSGRPAV TPLGTGLLGT ARGRNANPDM DFPLRLDDGL  660
PATLVGIGRL AAPGAGDGAG PLAEDDVCAG GGGMGELSLA DLLGQMSIPQ QLELLMGLPQ  720
QQMTEVLKQL PHTQQVELLL ALQEDRQNRV MAERQQQQQQ QQQPQQQQQQ QQQRQQQRQI  780
GAGGPQPQVL MLGAQGLRAA EIGGSGGGLG PRALKLDPED VPGRVGLLES LAAGARLNLA  840
PLGRAAGARG GALEGTEDEK AGLTRLQHQV SGKGFGAAHA AAQSLAAGTA YAAAGEASNM  900
QTTPGRLQPP PDGADRRGNS GEAVKLEVPE RAAKAFNSAK ASSSPGNTAS GATEQQQRQP  960
AVKQQEEEQP QSEGNNAAGE ASGRGGDRDG GNTGGAALDG CGDAAAAANT AEVAAAGDAA  1020
DVADAAHDAA YSCEEALERL SLKLHGVRPD ELAPDVAQRM HKWLESMDAV TLQGTLRSGC  1080
VNLVFDVSYR QPPAATDAAT RSTLTTSDAA GHRRAWAYRL AAAAIASSLG LELPAPFAAG  1140
GGRQRGDEAT EGGQWCGLCL QAAALAAARG IRVQVQVGNA VVYPPHAKQT PLAEQQQPAT  1200
AEVHELAPLA IVQGDHHAVA IMSGRGLNDP SARLHVRLNG RRLGALVQPQ QEQQLPPTDA  1260
DSKTGAVCSA AAGNYPMQGP SAQEQEQQRC GEECALVFLD APGQAGLAVL EWEAGGGAGV  1320
LGDWWPLVVA PDAQVAAEVN ALALNSDIAS GRGTEWLRRL LVDVGLVIDA AHNSPAGGLH  1380
AGLEPGVLER LVCRARCVVP FCEARMMPHT AAVARAFLAA AAAETETEAD AGIAAVSKLP  1440
SRASWSLSSS ACGSDFDYSD SEQKQEDHMD SSAGDATSPG TGQCSRSGVC KCPDSPCAGC  1500
FCYNTDGVKL ECCPPRPGIA ETGSAHAR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre02.g085150.t2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001701724.1	0.0	predicted protein
TrEMBL	A0A2K3E0W2	0.0	A0A2K3E0W2_CHLRE; Uncharacterized protein
STRING	EDP06699	0.0	(Chlamydomonas reinhardtii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-07	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Cre02.g085150.t2.1