PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre02.g085150.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

SBP

Protein Properties

Length: 1645aa MW: 165822 Da PI: 6.7117

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre02.g085150.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	77.4	2.2e-24	92	164	3	75
SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 + +gC+adl++ k y+rr+++Ce+h k+ + ++g++ rfCqqC++fh ++efD + r Cr+ L +rr Cre02.g085150.t1.1 92 RLQGCHADLTTSKAYYRRFRICEAHMKSMSLSIEGRSCRFCQQCGKFHLVEEFDGANRNCRKALMIRFYKRRN 164 5789***********************************************************9877666664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-27	87	152	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.162	88	165	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.89E-22	92	166	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-22	93	163	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.60.10	4.5E-4	812	869	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1645 aa Download sequence Send to blast
MARLEAREGV VPSAGGRADA RPEVACLVKV SVARARAGPA GASGFRKEGI RTLFERLMGR 60 TGYRRRTFGH VDRGHTHHAL APRTAHHVRV VRLQGCHADL TTSKAYYRRF RICEAHMKSM 120 SLSIEGRSCR FCQQCGKFHL VEEFDGANRN CRKALMIRFY KRRNMPLGGM QASLERNDPA 180 AGMGDPVEVR VEPRKRGRPR APRPNITEDD PGAAALAAGG GLPPPGLVGS NAAARAAAAA 240 GFDSGLQAAY IAASRGYQGS SGVGVTPATA IGPPGYSQGG VRMAGIQVQS GNYDNNNNND 300 GDDDSDAAPP RQRRSKGASA ARRASPGSSG AAGSGGLDLN GGQQLDGLNA LGGGLPPLGD 360 GLSGAGLGAG SFDVLGGGGP LEGLPGLPGR THGGGLGWRS GALGSAGHQV GGLGLVDGGL 420 GLGGGGGLRL GDLGLPLPLP GIGGGRGGGA GLGALSGLGL RGGGLLDAAG HGVGGAGAGG 480 LLLDALGGAG RLLAQAGQPM RLVLQPQLDG SRRGGGSGNQ SVGCSSSHSQ HEQLQDDSSG 540 LVGPLSRAAG ATRGVGLVGQ QQQQGATSRD AAAEALAALA ASGQLDVQML LAAVAASGGT 600 ASEQQAVLVA LLAKLPGGAE LLGSAGLQPR QEQDLEAGNP ERPLPAGLQR LAGRDGLGGG 660 RAGLLPLALA QDHEGVGNLG MGRLSNGTGG GGGRPLPALD VSGAVRPLGG GLGGLGRGRS 720 VGLDMGAVGA AAAAGGGSGG SGRPAVTPLG TGLLGTARGR NANPDMDFPL RLDDGLPATL 780 VGIGRLAAPG AGDGAGPLAE DDVCAGGGGM GELSLADLLG QMSIPQQLEL LMGLPQQQMT 840 EVLKQLPHTQ QVELLLALQE DRQNRVMAER QQQQQQQQQP QQQQQQQQQR QQQRQIGAGG 900 PQPQVLMLGA QGLRAAEIGG SGGGLGPRAL KLDPEDVPGR VGLLESLAAG ARLNLAPLGR 960 AAGARGGALE GTEDEKAGLT RLQHQVSGKG FGAAHAAAQS LAAGTAYAAA GEASNMQTTP 1020 GRLQPPPDGA DRRGNSGEAV KLEVPERAAK AFNSAKASSS PGNTASGATE QQQRQPAVKQ 1080 QEEEQPQSEG NNAAGEASGR GGDRDGGNTG GAALDGCGDA AAAANTAEVA AAGDAADVAD 1140 AAHDAAYSCE EALERLSLKL HGVRPDELAP DVAQRMHKWL ESMDAVTLQG TLRSGCVNLV 1200 FDVSYRQPPA ATDAATRSTL TTSDAAGHRR AWAYRLAAAA IASSLGLELP APFAAGGGRQ 1260 RGDEATEGGQ WCGLCLQAAA LAAARGIRVQ VQVGNAVVYP PHAKQTPLAE QQQPATAEVH 1320 ELAPLAIVQG DHHAVAIMSG RGLNDPSARL HVRLNGRRLG ALVQPQQEQQ LPPTDADSKT 1380 GAVCSAAAGN YPMQGPSAQE QEQQRCGEEC ALVFLDAPGQ AGLAVLEWEA GGGAGVLGDW 1440 WPLVVAPDAQ VAAEVNALAL NSDIASGRGT EWLRRLLVDV GLVIDAAHNS PAGGLHAGLE 1500 PGVLERLVCR ARCVVPFCEA RMMPHTAAVA RAFLAAAAAE TETEADAGIA AVSKLPSRAS 1560 WSLSSSACGS DFDYSDSEQK QEDHMDSSAG DATSPGTGQC SRSGVCKCPD SPCAGCFCYN 1620 TDGVKLECCP PRPGIAETGS AHAR*

Sequence ? help Back to Top

Protein Sequence Length: 1645 aa Download sequence Send to blast

MARLEAREGV VPSAGGRADA RPEVACLVKV SVARARAGPA GASGFRKEGI RTLFERLMGR  60
TGYRRRTFGH VDRGHTHHAL APRTAHHVRV VRLQGCHADL TTSKAYYRRF RICEAHMKSM  120
SLSIEGRSCR FCQQCGKFHL VEEFDGANRN CRKALMIRFY KRRNMPLGGM QASLERNDPA  180
AGMGDPVEVR VEPRKRGRPR APRPNITEDD PGAAALAAGG GLPPPGLVGS NAAARAAAAA  240
GFDSGLQAAY IAASRGYQGS SGVGVTPATA IGPPGYSQGG VRMAGIQVQS GNYDNNNNND  300
GDDDSDAAPP RQRRSKGASA ARRASPGSSG AAGSGGLDLN GGQQLDGLNA LGGGLPPLGD  360
GLSGAGLGAG SFDVLGGGGP LEGLPGLPGR THGGGLGWRS GALGSAGHQV GGLGLVDGGL  420
GLGGGGGLRL GDLGLPLPLP GIGGGRGGGA GLGALSGLGL RGGGLLDAAG HGVGGAGAGG  480
LLLDALGGAG RLLAQAGQPM RLVLQPQLDG SRRGGGSGNQ SVGCSSSHSQ HEQLQDDSSG  540
LVGPLSRAAG ATRGVGLVGQ QQQQGATSRD AAAEALAALA ASGQLDVQML LAAVAASGGT  600
ASEQQAVLVA LLAKLPGGAE LLGSAGLQPR QEQDLEAGNP ERPLPAGLQR LAGRDGLGGG  660
RAGLLPLALA QDHEGVGNLG MGRLSNGTGG GGGRPLPALD VSGAVRPLGG GLGGLGRGRS  720
VGLDMGAVGA AAAAGGGSGG SGRPAVTPLG TGLLGTARGR NANPDMDFPL RLDDGLPATL  780
VGIGRLAAPG AGDGAGPLAE DDVCAGGGGM GELSLADLLG QMSIPQQLEL LMGLPQQQMT  840
EVLKQLPHTQ QVELLLALQE DRQNRVMAER QQQQQQQQQP QQQQQQQQQR QQQRQIGAGG  900
PQPQVLMLGA QGLRAAEIGG SGGGLGPRAL KLDPEDVPGR VGLLESLAAG ARLNLAPLGR  960
AAGARGGALE GTEDEKAGLT RLQHQVSGKG FGAAHAAAQS LAAGTAYAAA GEASNMQTTP  1020
GRLQPPPDGA DRRGNSGEAV KLEVPERAAK AFNSAKASSS PGNTASGATE QQQRQPAVKQ  1080
QEEEQPQSEG NNAAGEASGR GGDRDGGNTG GAALDGCGDA AAAANTAEVA AAGDAADVAD  1140
AAHDAAYSCE EALERLSLKL HGVRPDELAP DVAQRMHKWL ESMDAVTLQG TLRSGCVNLV  1200
FDVSYRQPPA ATDAATRSTL TTSDAAGHRR AWAYRLAAAA IASSLGLELP APFAAGGGRQ  1260
RGDEATEGGQ WCGLCLQAAA LAAARGIRVQ VQVGNAVVYP PHAKQTPLAE QQQPATAEVH  1320
ELAPLAIVQG DHHAVAIMSG RGLNDPSARL HVRLNGRRLG ALVQPQQEQQ LPPTDADSKT  1380
GAVCSAAAGN YPMQGPSAQE QEQQRCGEEC ALVFLDAPGQ AGLAVLEWEA GGGAGVLGDW  1440
WPLVVAPDAQ VAAEVNALAL NSDIASGRGT EWLRRLLVDV GLVIDAAHNS PAGGLHAGLE  1500
PGVLERLVCR ARCVVPFCEA RMMPHTAAVA RAFLAAAAAE TETEADAGIA AVSKLPSRAS  1560
WSLSSSACGS DFDYSDSEQK QEDHMDSSAG DATSPGTGQC SRSGVCKCPD SPCAGCFCYN  1620
TDGVKLECCP PRPGIAETGS AHAR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-15	88	163	8	83	squamosa promoter binding protein-like 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre02.g085150.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001701724.1	0.0	predicted protein
TrEMBL	A0A2K3E0U5	0.0	A0A2K3E0U5_CHLRE; Uncharacterized protein
STRING	EDP06699	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-16	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Cre02.g085150.t1.1