PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre02.g079200.t1.2 | ||||||||
Common Name | HAP3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | NF-YB | ||||||||
Protein Properties | Length: 210aa MW: 21897 Da PI: 5.3882 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 177.5 | 1.3e-55 | 16 | 110 | 2 | 96 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 reqdrflPian+srimkk+lP+naki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa++tlGfe+y+eplk+yl+k+re Cre02.g079200.t1.2 16 REQDRFLPIANISRIMKKALPNNAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMTTLGFEEYLEPLKLYLAKFRE 106 89***************************************************************************************** PP NF-YB 93 lege 96 +e++ Cre02.g079200.t1.2 107 AEAA 110 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.9E-55 | 11 | 145 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.86E-40 | 18 | 128 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-28 | 21 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.8E-21 | 49 | 67 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 52 | 68 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.8E-21 | 68 | 86 | No hit | No description |
PRINTS | PR00615 | 2.8E-21 | 87 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSGDEGDGRD GNSNAREQDR FLPIANISRI MKKALPNNAK IAKDAKETVQ ECVSEFISFI 60 TSEASDKCQR EKRKTINGDD LLWAMTTLGF EEYLEPLKLY LAKFREAEAA TSNKPGGGSG 120 ANAEAKREAA AAAAAAAAAA AAVSQQQAAQ QQMAAQLQAG MAFPGLMPAQ FQGLPPGMIP 180 AGFPGLPLPP GVPGLMMPGG VVPKQEPPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 5e-48 | 16 | 106 | 3 | 93 | NF-YB |
4awl_B | 5e-48 | 16 | 106 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 5e-48 | 16 | 106 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Cre.3206 | 0.0 | normal conditions |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre02.g079200.t1.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002949581.1 | 7e-80 | hypothetical protein VOLCADRAFT_117284 | ||||
Swissprot | O23310 | 9e-62 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A0I9QPW6 | 1e-148 | A0A0I9QPW6_CHLRE; CCAAT-box binding factor HAP3-like protein | ||||
STRING | XP_002949581.1 | 3e-79 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2023 | 16 | 16 | Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 9e-63 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Cre02.g079200.t1.2 |
Publications ? help Back to Top | |||
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